Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 51 curated entries in PaperBLAST's database that match '2.7.7.9' as complete word(s).

These curated entries have 41 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO1665: UTP-glucose-1-phosphate uridylyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

GALU_ECOLI / P0AEP3: UTP--glucose-1-phosphate uridylyltransferase; Alpha-D-glucosyl-1-phosphate uridylyltransferase; UDP-Glc PPase; UDP-glucose pyrophosphorylase; UDPGP; Uridine diphosphoglucose pyrophosphorylase; EC 2.7.7.9 from Escherichia coli
GALU_SHIFL / P0AEP6: UTP--glucose-1-phosphate uridylyltransferase; Alpha-D-glucosyl-1-phosphate uridylyltransferase; UDP-glucose pyrophosphorylase; UDPGP; Uridine diphosphoglucose pyrophosphorylase; EC 2.7.7.9 from Shigella flexneri
GalU / b1236: UTP—glucose-1-phosphate uridylyltransferase (EC 2.7.7.64; EC 2.7.7.9) from Escherichia coli
galU: UTP--glucose-1-phosphate uridylyltransferase; EC 2.7.7.9 from Escherichia coli

71% id,
98% cov

Q8PK83: UTP-glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) from Xanthomonas citri

51% id,
94% cov

A0A0H2X8N4: UTP-glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) from Xanthomonas campestris

48% id,
97% cov

More...

SO4687: UDP-glucose 6-dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

Q8GQP9: UTP-glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) from Streptococcus equi

55% id,
100% cov

SO3186: glucose-1-phosphate-thymidylyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

AGLF_HALVD / D4GYH1: UTP--glucose-1-phosphate uridylyltransferase AglF; Archaeal glycosylation protein F; EC 2.7.7.9 from Haloferax volcanii

29% id,
94% cov

GALU_ECOLI / P0AEP3: UTP--glucose-1-phosphate uridylyltransferase; Alpha-D-glucosyl-1-phosphate uridylyltransferase; UDP-Glc PPase; UDP-glucose pyrophosphorylase; UDPGP; Uridine diphosphoglucose pyrophosphorylase; EC 2.7.7.9 from Escherichia coli
GALU_SHIFL / P0AEP6: UTP--glucose-1-phosphate uridylyltransferase; Alpha-D-glucosyl-1-phosphate uridylyltransferase; UDP-glucose pyrophosphorylase; UDPGP; Uridine diphosphoglucose pyrophosphorylase; EC 2.7.7.9 from Shigella flexneri
GalU / b1236: UTP—glucose-1-phosphate uridylyltransferase (EC 2.7.7.64; EC 2.7.7.9) from Escherichia coli
galU: UTP--glucose-1-phosphate uridylyltransferase; EC 2.7.7.9 from Escherichia coli

25% id,
99% cov

Q8YS18: UTP-glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) from Nostoc sp.

25% id,
97% cov

More...

SO3634: nucleotidyltransferase family protein (NCBI ptt file)
is similar to:
PaperBLAST

GTAB_STAA8 / Q2G1T6: UTP--glucose-1-phosphate uridylyltransferase; Alpha-D-glucosyl-1-phosphate uridylyltransferase; UDP-glucose pyrophosphorylase; UDPGP; Uridine diphosphoglucose pyrophosphorylase; EC 2.7.7.9 from Staphylococcus aureus

26% id,
92% cov

A0A0W1QGK2: UTP-glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) from Sphingomonas sp.

25% id,
87% cov

AGLF_HALVD / D4GYH1: UTP--glucose-1-phosphate uridylyltransferase AglF; Archaeal glycosylation protein F; EC 2.7.7.9 from Haloferax volcanii

34% id,
45% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory