Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 182 curated entries in PaperBLAST's database that match '3.2.1.20' as complete word(s).

These curated entries have 139 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO2213: oligo-1,6-glucosidase (NCBI ptt file)
is similar to:
PaperBLAST

Shewana3_2311: Alpha-glucosidase (EC 3.2.1.20) from Shewanella sp.

91% id,
100% cov

BAL49684.1: α-glucosidase (AglA;HaG) (EC 3.2.1.20)

56% id,
100% cov

Psest_0870: Alpha-glucosidase (EC 3.2.1.20) from Pseudomonas stutzeri

59% id,
93% cov

More...

SO2450: alpha-glucosidase (NCBI ptt file)
is similar to:
PaperBLAST

AEW20125.1: α-glucosidase (SusB;Aglu;BFO_2272) (EC 3.2.1.20)

40% id,
97% cov

SO2156: alpha amylase family protein (NCBI ptt file)
is similar to:
PaperBLAST

BAA12704.1: α-glucosidase / exo-α-1,4-glucosidase (EC 3.2.1.20)

24% id,
28% cov

BAE48285.1: α-glucosidase (Gsj) (EC 3.2.1.20)
Q33E90: alpha-glucosidase (EC 3.2.1.20) from Geobacillus sp.

24% id,
28% cov

AAL05573.1: α-glucosidase (AglB;AglA;BAD_0452) (EC 3.2.1.20)

26% id,
20% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory