Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 520 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 437 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO2250: beta-hexosaminidase (NCBI ptt file)
is similar to:

NAG3_CELFI / Q7WUL3: Beta-N-acetylglucosaminidase/beta-glucosidase; 3-beta-N-acetyl-D-glucosaminidase/beta-D-glucosidase; Nag3; EC; EC from Cellulomonas fimi
AAQ05801.1: bifunctional N-acetyl-β-glucosaminidase/β-glucosidase (Nag3) (acts as a phosphorylase in presence of phosphate) (Nag3A) (EC||2.4.1.-)

26% id,
52% cov

AEF56853.1: β-glucosidase A3 (EC

28% id,
45% cov

SO4110: MSHA biogenesis protein MshN, putative (NCBI ptt file)
is similar to:

BTGE_EMENI / Q5BD29: Probable beta-glucosidase btgE; Beta-D-glucoside glucohydrolase btgE; Cellobiase btgE; Gentiobiase btgE; EC from Emericella nidulans

22% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3186857-3187618 (frame +2) on 139
is similar to:

psu1 / RF|NP_593500.1: cell wall protein Psu1, beta-glucosidase (predicted); EC from Schizosaccharomyces pombe

31% id,
25% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory