Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 37 curated entries in PaperBLAST's database that match '3.5.1.25'.

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO3505: N-acetylglucosamine-6-phosphate deacetylase (NCBI ptt file)
is similar to:
PaperBLAST

SO3505: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Shewanella oneidensis

100% id,
100% cov

Shewana3_3112: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Shewanella sp.

95% id,
100% cov

Sama_0946: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Shewanella amazonensis

74% id,
99% cov

More...

SO0017: hypothetical amidohydrolase (NCBI ptt file)
is similar to:
PaperBLAST

nagA / A3CQ16: N-acetylglucosamine-6-phosphate deacetylase subunit (EC 3.5.1.25) from Streptococcus sanguinis

31% id,
31% cov

BAA22834.1: N-acetylglucosamine 6-phosphate deacetylase (NagA) (EC 3.5.1.25)

38% id,
14% cov

NAGA_VIBCH / O32445: N-acetylglucosamine-6-phosphate deacetylase; GlcNAc 6-P deacetylase; EC 3.5.1.25 from Vibrio cholerae
nagA / O32445: N-acetylglucosamine-6-phosphate deacetylase subunit (EC 3.5.1.25) from Vibrio cholerae

38% id,
14% cov

More...

SO3148: conserved hypothetical protein (NCBI ptt file)
is similar to:
PaperBLAST

AAN79225.1: c0752 (NagA) (EC 3.5.1.25)

25% id,
30% cov

NAGA_ECO57 / P0AF19: N-acetylglucosamine-6-phosphate deacetylase; GlcNAc 6-P deacetylase; EC 3.5.1.25 from Escherichia coli
NAGA_ECOLI / P0AF18: N-acetylglucosamine-6-phosphate deacetylase; GlcNAc 6-P deacetylase; EC 3.5.1.25 from Escherichia coli
NagA / b0677: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Escherichia coli
AAG54999.1: EDL933_0745 (EC 3.5.1.25)
AAC73771.1: N-acetylglucosamine 6-phosphate deacetylase (NagA;b0677) (EC 3.5.1.25)
BAB34130.1: ECs0707 (EC 3.5.1.25)
nagA / P0AF18: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Escherichia coli

25% id,
30% cov

Sama_0946: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Shewanella amazonensis

34% id,
15% cov

More...

SO0990: urease domain protein (NCBI ptt file)
is similar to:
PaperBLAST

Sama_0946: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Shewanella amazonensis

29% id,
22% cov

NAGA_HUMAN / Q9Y303: N-acetylglucosamine-6-phosphate deacetylase; GlcNAc 6-P deacetylase; Amidohydrolase domain-containing protein 2; EC 3.5.1.25 from Homo sapiens

31% id,
15% cov

NAGA_MOUSE / Q8JZV7: N-acetylglucosamine-6-phosphate deacetylase; GlcNAc 6-P deacetylase; Amidohydrolase domain-containing protein 2; EC 3.5.1.25 from Mus musculus

29% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory