Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 23 curated entries in PaperBLAST's database that match '3.6.1.31'.

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO2067: phosphoribosyl-ATP pyrophosphatase/phosphoribosyl-AMP cyclohydrolase (NCBI ptt file)
is similar to:
PaperBLAST

HisE / b2026: putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) from Escherichia coli
hisI / P06989: putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) from Escherichia coli

64% id,
99% cov

Ga0059261_1051: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Sphingomonas koreensis

45% id,
96% cov

HP15_3195: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Marinobacter adhaerens

42% id,
95% cov

More...

SO_3442: nucleoside triphosphate pyrophosphohydrolase (RefSeq)
is similar to:
PaperBLAST

Q72CU7: phosphoribosyl-ATP diphosphatase (EC 3.6.1.31) from Desulfovibrio vulgaris
DVU1186: phosphoribosyl-ATP diphosphatase (EC 3.6.1.31) from Desulfovibrio vulgaris

34% id,
97% cov

SO2073: histidinol dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

HIS2_YEAST / P00815: Histidine biosynthesis trifunctional protein; EC 3.5.4.19; EC 3.6.1.31; EC 1.1.1.23 from Saccharomyces cerevisiae

47% id,
53% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory