Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 17 curated entries in PaperBLAST's database that match '3.7.1.3' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO4413: hypothetical kynureninase (NCBI ptt file)
is similar to:
PaperBLAST

PS417_23650: Kynureninase (EC 3.7.1.3) from Pseudomonas simiae

29% id,
85% cov

AO353_05935: Kynureninase (EC 3.7.1.3) from Pseudomonas fluorescens

26% id,
92% cov

KYNU_PSEFL / P83788: Kynureninase; L-kynurenine hydrolase; EC 3.7.1.3 from Pseudomonas fluorescens
kyn / P83788: kynureninase subunit (EC 3.7.1.3) from Pseudomonas fluorescens

26% id,
92% cov

More...

SO2264: cysteine desulfurase (NCBI ptt file)
is similar to:
PaperBLAST

AO353_05935: Kynureninase (EC 3.7.1.3) from Pseudomonas fluorescens

26% id,
79% cov

KYNU_PSEFL / P83788: Kynureninase; L-kynurenine hydrolase; EC 3.7.1.3 from Pseudomonas fluorescens
kyn / P83788: kynureninase subunit (EC 3.7.1.3) from Pseudomonas fluorescens

23% id,
83% cov

PfGW456L13_4288: Kynureninase (EC 3.7.1.3) from Pseudomonas fluorescens

24% id,
73% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory