Searching in Shewanella oneidensis MR-1 (MR1)
Found 22 curated entries in PaperBLAST's database that match '4.1.1.18'.
These curated entries have 13 distinct sequences.
Running ublast with E ≤ 0.01
Found 5 relevant proteins in Shewanella oneidensis MR-1, or try another query
| SO4309: diaminopimelate decarboxylase (NCBI ptt file) is similar to: | PaperBLAST |
A0A0H3H393: lysine decarboxylase (EC 4.1.1.18) from Klebsiella oxytoca | 33% id, 100% cov |
ldc / O50657: L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium | 24% id, 95% cov |
| SO0314: ornithine decarboxylase, inducible (NCBI ptt file) is similar to: | PaperBLAST |
Q9Z4R7: lysine decarboxylase (EC 4.1.1.18) from Eikenella corrodens | 33% id, 95% cov |
LDCA_PSEAE / Q9I2S7: Lysine decarboxylase LdcA; EC 4.1.1.18 from Pseudomonas aeruginosa | 35% id, 88% cov |
LDCI_ECOLI / P0A9H3: Inducible lysine decarboxylase; LDCI; EC 4.1.1.18 from Escherichia coli | 32% id, 94% cov |
| SO4136: decarboxylase, pyridoxal-dependent (NCBI ptt file) is similar to: | PaperBLAST |
ldc / O50657: L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium | 31% id, 90% cov |
ODC_NICGU / Q9FPK5: Ornithine decarboxylase, chloroplastic; Lysine decarboxylase; EC 4.1.1.17; EC 4.1.1.18 from Nicotiana glutinosa | 32% id, 63% cov |
| SO1769: glutamate decarboxylase, putative (NCBI ptt file) is similar to: | PaperBLAST |
bibA / B6EP92: L-lysine decarboxylase (EC 4.1.1.18) from Aliivibrio salmonicida | 26% id, 86% cov |
desA / Q9L072: L-lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor | 31% id, 67% cov |
| SO1870: biosynthetic arginine decarboxylase (NCBI ptt file) is similar to: | PaperBLAST |
ldc / O50657: L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium | 23% id, 65% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 4 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory