Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 22 curated entries in PaperBLAST's database that match '4.1.1.18'.

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO4309: diaminopimelate decarboxylase (NCBI ptt file)
is similar to:
PaperBLAST

A0A0H3H393: lysine decarboxylase (EC 4.1.1.18) from Klebsiella oxytoca

33% id,
100% cov

ldc / O50657: L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium
O50657: lysine decarboxylase (EC 4.1.1.18) from Selenomonas ruminantium

24% id,
95% cov

SO0314: ornithine decarboxylase, inducible (NCBI ptt file)
is similar to:
PaperBLAST

Q9Z4R7: lysine decarboxylase (EC 4.1.1.18) from Eikenella corrodens

33% id,
95% cov

LDCA_PSEAE / Q9I2S7: Lysine decarboxylase LdcA; EC 4.1.1.18 from Pseudomonas aeruginosa

35% id,
88% cov

LDCI_ECOLI / P0A9H3: Inducible lysine decarboxylase; LDCI; EC 4.1.1.18 from Escherichia coli
LdcI / b4131: lysine decarboxylase 1 (EC 4.1.1.18) from Escherichia coli
cadA / RF|NP_418555: lysine decarboxylase, inducible; EC 4.1.1.18 from Escherichia coli
cadA / P0A9H3: lysine decarboxylase 1 (EC 4.1.1.18) from Escherichia coli
P0A9H3: lysine decarboxylase (EC 4.1.1.18) from Escherichia coli

32% id,
94% cov

More...

SO4136: decarboxylase, pyridoxal-dependent (NCBI ptt file)
is similar to:
PaperBLAST

ldc / O50657: L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium
O50657: lysine decarboxylase (EC 4.1.1.18) from Selenomonas ruminantium

31% id,
90% cov

SO1769: glutamate decarboxylase, putative (NCBI ptt file)
is similar to:
PaperBLAST

bibA / B6EP92: L-lysine decarboxylase (EC 4.1.1.18) from Aliivibrio salmonicida

26% id,
86% cov

desA / Q9L072: L-lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor
Q9L072: lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor

31% id,
67% cov

SO1870: biosynthetic arginine decarboxylase (NCBI ptt file)
is similar to:
PaperBLAST

ldc / O50657: L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium
O50657: lysine decarboxylase (EC 4.1.1.18) from Selenomonas ruminantium

23% id,
65% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory