Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 56 curated entries in PaperBLAST's database that match '4.1.1.19'.

These curated entries have 40 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO1870: biosynthetic arginine decarboxylase (NCBI ptt file)
is similar to:
PaperBLAST

Q7MK24: arginine decarboxylase (EC 4.1.1.19) from Vibrio vulnificus

69% id,
99% cov

Q8ZHG8: arginine decarboxylase (EC 4.1.1.19) from Yersinia pestis

57% id,
96% cov

SPEA_ECOLI / P21170: Biosynthetic arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
SpeA / b2938: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Escherichia coli
speA / P21170: biosynthetic arginine decarboxylase (EC 4.1.1.19) from Escherichia coli
P21170: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

57% id,
94% cov

More...

SO0314: ornithine decarboxylase, inducible (NCBI ptt file)
is similar to:
PaperBLAST

ADIA_ECOLI / P28629: Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
AdiA / b4117: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
adiA / GI|145339: biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli
adiA / P28629: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
P28629: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

30% id,
95% cov

E8X9U7: arginine decarboxylase (EC 4.1.1.19) from Salmonella enterica

29% id,
95% cov

SO4136: decarboxylase, pyridoxal-dependent (NCBI ptt file)
is similar to:
PaperBLAST

ADC / Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens
Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens

25% id,
78% cov

O25176: arginine decarboxylase (EC 4.1.1.19) from Helicobacter pylori

22% id,
51% cov

Q0PAC6: arginine decarboxylase (EC 4.1.1.19) from Campylobacter jejuni

25% id,
40% cov

SO4309: diaminopimelate decarboxylase (NCBI ptt file)
is similar to:
PaperBLAST

SPEA_ECOLI / P21170: Biosynthetic arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
SpeA / b2938: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Escherichia coli
speA / P21170: biosynthetic arginine decarboxylase (EC 4.1.1.19) from Escherichia coli
P21170: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

24% id,
59% cov

ADC / P49726: arginine decarboxylase (EC 4.1.1.19) from Solanum lycopersicum

26% id,
52% cov

MADC3 / Q9M617: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea

25% id,
51% cov

More...

SO2476: polysaccharide biosynthesis protein (NCBI ptt file)
is similar to:
PaperBLAST

Q5NT93: arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium

22% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory