Searching in Shewanella oneidensis MR-1 (MR1)
Found 26 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).
These curated entries have 16 distinct sequences.
Running ublast with E ≤ 0.01
Found 7 relevant proteins in Shewanella oneidensis MR-1, or try another query
| SO4309: diaminopimelate decarboxylase (NCBI ptt file) is similar to: | PaperBLAST |
Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae | 69% id, 100% cov |
Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis | 48% id, 99% cov |
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori | 44% id, 98% cov |
| SO4136: decarboxylase, pyridoxal-dependent (NCBI ptt file) is similar to: | PaperBLAST |
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori | 28% id, 92% cov |
lysA / P23630: diaminopimelate decarboxylase subunit (EC 4.1.1.20) from Bacillus subtilis | 28% id, 86% cov |
Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae | 26% id, 90% cov |
| SO3986: aspartokinase III, lysine-sensitive (NCBI ptt file) is similar to: | PaperBLAST |
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica | 35% id, 52% cov |
| SO1870: biosynthetic arginine decarboxylase (NCBI ptt file) is similar to: | PaperBLAST |
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori | 24% id, 72% cov |
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori | 24% id, 66% cov |
DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii | 24% id, 59% cov |
| SO3415: aspartokinase I/homoserine dehydrogenase, threonine-sensitive (NCBI ptt file) is similar to: | PaperBLAST |
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica | 29% id, 52% cov |
| SO4055: aspartokinase II/homoserine dehydrogenase, methionine-sensitive (NCBI ptt file) is similar to: | PaperBLAST |
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica | 26% id, 55% cov |
| SO3427: aspartokinase (NCBI ptt file) is similar to: | PaperBLAST |
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica | 27% id, 46% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 7 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory