Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 10 curated entries in PaperBLAST's database that match '4.1.99.1' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO3497: aminotransferase, class III (NCBI ptt file)
is similar to:
PaperBLAST

P31015: tryptophanase (EC 4.1.99.1) from Symbiobacterium thermophilum

36% id,
14% cov

P28796: tryptophanase (EC 4.1.99.1) from Proteus vulgaris

35% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory