Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 18 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO0097: urocanate hydratase (NCBI ptt file)
is similar to:

Ga0059261_3961: Urocanate hydratase (EC from Sphingomonas koreensis

77% id,
99% cov

PGA1_c36320: Urocanate hydratase (EC from Phaeobacter inhibens

76% id,
99% cov

HUTU_PSEPU / P25080: Urocanate hydratase; Urocanase; Imidazolonepropionate hydrolase; EC from Pseudomonas putida
hutU / P25080: urocanase subunit (EC from Pseudomonas putida

77% id,
98% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory