Curated BLAST
Searching in Shewanella oneidensis MR-1 (MR1)
Found 17 curated entries in PaperBLAST's database that match '4.2.1.82' as complete word(s).
These curated entries have 8 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Shewanella oneidensis MR-1, or try another query
SO4345: dihydroxy-acid dehydratase (NCBI ptt file) is similar to: | PaperBLAST |
AO356_28760: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens | 34% id, 57% cov |
Pf6N2E2_1668: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens | 33% id, 57% cov |
xylD / A0A0H3C6H6: xylonate dehydratase monomer (EC 4.2.1.82) from Caulobacter vibrioides CCNA_00862: Xylonate dehydratase (EC 4.2.1.82) from Caulobacter crescentus | 35% id, 51% cov |
XYLD_CAUVC / Q9A9Z2: D-xylonate dehydratase; XyDHT; Gluconate dehydratase; EC 4.2.1.82; EC 4.2.1.39 from Caulobacter vibrioides Q9A9Z2: xylonate dehydratase (EC 4.2.1.82) from Caulobacter vibrioides | 35% id, 51% cov |
YAGF_ECOLI / P77596: D-xylonate dehydratase YagF; EC 4.2.1.82 from Escherichia coli YagF / b0269: CP4-6 prophage; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli yagF / P77596: CP4-6 prophage; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli | 30% id, 52% cov |
YJHG_ECOLI / P39358: D-xylonate dehydratase YjhG; EC 4.2.1.82 from Escherichia coli YjhG / b4297: KpLE2 phage-like element; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli yjhG / P39358: KpLE2 phage-like element; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli P39358: xylonate dehydratase (EC 4.2.1.82) from Escherichia coli | 30% id, 49% cov |
Pf6N2E2_1668: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens | 31% id, 31% cov |
YJHG_ECOLI / P39358: D-xylonate dehydratase YjhG; EC 4.2.1.82 from Escherichia coli YjhG / b4297: KpLE2 phage-like element; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli yjhG / P39358: KpLE2 phage-like element; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli P39358: xylonate dehydratase (EC 4.2.1.82) from Escherichia coli | 41% id, 24% cov |
AO356_28760: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens | 31% id, 29% cov |
YAGF_ECOLI / P77596: D-xylonate dehydratase YagF; EC 4.2.1.82 from Escherichia coli YagF / b0269: CP4-6 prophage; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli yagF / P77596: CP4-6 prophage; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli | 39% id, 22% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. These were all redundant with annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory