Curated BLAST
Searching in Shewanella oneidensis MR-1 (MR1)
Found 105 curated entries in PaperBLAST's database that match '4.2.3.5'.
These curated entries have 77 distinct sequences.
Running ublast with E ≤ 0.01
Found 1 relevant proteins in Shewanella oneidensis MR-1, or try another query
SO3078.2: hypothetical chorismate synthase (NCBI ptt file)
is similar to: | PaperBLAST |
AROC_ECOLI / P12008: Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EPSP phospholyase; EC 4.2.3.5 from Escherichia coli
AroC / b2329: chorismate synthase (EC 4.2.3.5) from Escherichia coli
aroC / P12008: chorismate synthase (EC 4.2.3.5) from Escherichia coli | 78% id,
72% cov |
AROC_HELPY / P56122: Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 4.2.3.5 from Helicobacter pylori | 47% id,
68% cov |
AROC_YEAST / P28777: Chorismate synthase ARO2; 5-enolpyruvylshikimate-3-phosphate phospholyase; Aromatic amino acid requiring protein 2; EC 1.5.1.38; EC 4.2.3.5 from Saccharomyces cerevisiae | 44% id,
72% cov |
C8Z2I6: chorismate synthase (EC 4.2.3.5) from Verticillium longisporum | 45% id,
66% cov |
B5AAU3: chorismate synthase (EC 4.2.3.5) from Hordeum vulgare | 50% id,
58% cov |
AROC_NEUCR / Q12640: Chorismate synthase aro-2; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 1.5.1.38; EC 4.2.3.5 from Neurospora crassa | 46% id,
63% cov |
Q71Y87: chorismate synthase (EC 4.2.3.5) from Listeria monocytogenes | 41% id,
66% cov |
AROC_STRPN / P0A2Y6: Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 4.2.3.5 from Streptococcus pneumoniae | 40% id,
66% cov |
AROC_AQUAE / O66493: Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 4.2.3.5 from Aquifex aeolicus | 39% id,
66% cov |
AROC_MYCTU / P9WPY1: Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 4.2.3.5 from Mycobacterium tuberculosis | 37% id,
68% cov |
AROC_STAAU / Q59803: Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 4.2.3.5 from Staphylococcus aureus | 37% id,
66% cov |
O15864: chorismate synthase (EC 4.2.3.5) from Plasmodium falciparum | 45% id,
30% cov |
O15864: chorismate synthase (EC 4.2.3.5) from Plasmodium falciparum | 43% id,
11% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins.
These remaining reading frames may be pseudogenes, omissions in the genome annotation,
or N-terminal extensions of annotated proteins.
3198472-3198822 (frame -1) on 139
is similar to: | PaperBLAST |
AROC_ECOLI / P12008: Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EPSP phospholyase; EC 4.2.3.5 from Escherichia coli
AroC / b2329: chorismate synthase (EC 4.2.3.5) from Escherichia coli
aroC / P12008: chorismate synthase (EC 4.2.3.5) from Escherichia coli
Also see hits to annotated proteins above | 72% id,
29% cov |
C8Z2I6: chorismate synthase (EC 4.2.3.5) from Verticillium longisporum
Also see hits to annotated proteins above | 38% id,
32% cov |
AROC_HELPY / P56122: Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 4.2.3.5 from Helicobacter pylori
Also see hits to annotated proteins above | 48% id,
25% cov |
AROC_YEAST / P28777: Chorismate synthase ARO2; 5-enolpyruvylshikimate-3-phosphate phospholyase; Aromatic amino acid requiring protein 2; EC 1.5.1.38; EC 4.2.3.5 from Saccharomyces cerevisiae
Also see hits to annotated proteins above | 39% id,
29% cov |
B5AAU3: chorismate synthase (EC 4.2.3.5) from Hordeum vulgare
Also see hits to annotated proteins above | 46% id,
24% cov |
AROC_NEUCR / Q12640: Chorismate synthase aro-2; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 1.5.1.38; EC 4.2.3.5 from Neurospora crassa
Also see hits to annotated proteins above | 41% id,
23% cov |
AROC_STAAU / Q59803: Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 4.2.3.5 from Staphylococcus aureus
Also see hits to annotated proteins above | 29% id,
29% cov |
O15864: chorismate synthase (EC 4.2.3.5) from Plasmodium falciparum
Also see hits to annotated proteins above | 41% id,
15% cov |
More... |
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory