Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 82 curated entries in PaperBLAST's database that match '4.3.1.2'.

These curated entries have 69 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO0098: histidine ammonia-lyase (NCBI ptt file)
is similar to:
PaperBLAST

Q54JI7: phenylalanine ammonia-lyase (EC 4.3.1.24) from Dictyostelium discoideum

42% id,
97% cov

TALY_CERS4 / Q3IWB0: Tyrosine ammonia-lyase; EC 4.3.1.23 from Cereibacter sphaeroides
Q3IWB0: tyrosine ammonia-lyase (EC 4.3.1.23) from Cereibacter sphaeroides

38% id,
96% cov

TALY_CUPMC / Q1LRV9: Tyrosine ammonia-lyase; CmTAL; Tyrosine 2,3-aminomutase; EC 4.3.1.23; EC 5.4.3.6 from Cupriavidus metallidurans

39% id,
86% cov

More...

SO4374: histidine ammonia-lyase, putative (NCBI ptt file)
is similar to:
PaperBLAST

TAM_STRGL / Q8GMG0: MIO-dependent tyrosine 2,3-aminomutase; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Streptomyces globisporus

35% id,
97% cov

TAM_MYXFU / B8ZV93: Tyrosine 2,3-aminomutase; MfTAM; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Myxococcus fulvus

35% id,
94% cov

TAM_MYXSM / B8ZV94: Tyrosine 2,3-aminomutase; MxTAM; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Myxococcus sp.

35% id,
94% cov

More...

SO3057: Pal/histidase family protein (NCBI ptt file)
is similar to:
PaperBLAST

TALY_CERS4 / Q3IWB0: Tyrosine ammonia-lyase; EC 4.3.1.23 from Cereibacter sphaeroides
Q3IWB0: tyrosine ammonia-lyase (EC 4.3.1.23) from Cereibacter sphaeroides

26% id,
97% cov

TAM_STRGL / Q8GMG0: MIO-dependent tyrosine 2,3-aminomutase; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Streptomyces globisporus

25% id,
95% cov

TAM_CHOCO / Q0VZ68: Tyrosine 2,3-aminomutase; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Chondromyces crocatus

23% id,
95% cov

More...

SO3299: Pal/histidase family protein (NCBI ptt file)
is similar to:
PaperBLAST

Q54JI7: phenylalanine ammonia-lyase (EC 4.3.1.24) from Dictyostelium discoideum

23% id,
96% cov

TALY_CERS4 / Q3IWB0: Tyrosine ammonia-lyase; EC 4.3.1.23 from Cereibacter sphaeroides
Q3IWB0: tyrosine ammonia-lyase (EC 4.3.1.23) from Cereibacter sphaeroides

23% id,
93% cov

PAL3_ARATH / P45725: Phenylalanine ammonia-lyase 3; EC 4.3.1.24 from Arabidopsis thaliana

24% id,
73% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory