Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 35 curated entries in PaperBLAST's database that match '4.3.1.3'.

These curated entries have 26 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO0098: histidine ammonia-lyase (NCBI ptt file)
is similar to:
PaperBLAST

HUTH_PSEPU / P21310: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Pseudomonas putida
hutH / P21310: histidase subunit (EC 4.3.1.3) from Pseudomonas putida
P21310: histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas putida

68% id,
100% cov

Pf6N2E2_3799: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens

67% id,
99% cov

BWI76_RS08740: Histidine ammonia-lyase (EC 4.3.1.3) from Klebsiella michiganensis

67% id,
99% cov

More...

SO4374: histidine ammonia-lyase, putative (NCBI ptt file)
is similar to:
PaperBLAST

Ac3H11_2558: Histidine ammonia-lyase (EC 4.3.1.3) from Acidovorax sp.

33% id,
98% cov

SM_b21165: Histidine ammonia-lyase (EC 4.3.1.3) from Sinorhizobium meliloti

34% id,
93% cov

HUTH_DICDI / Q54JI7: Probable histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Dictyostelium discoideum

32% id,
98% cov

More...

SO3057: Pal/histidase family protein (NCBI ptt file)
is similar to:
PaperBLAST

HUTH_PSEPU / P21310: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Pseudomonas putida
hutH / P21310: histidase subunit (EC 4.3.1.3) from Pseudomonas putida
P21310: histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas putida

28% id,
97% cov

SM_b21165: Histidine ammonia-lyase (EC 4.3.1.3) from Sinorhizobium meliloti

27% id,
92% cov

Sama_1631: Histidine ammonia-lyase (EC 4.3.1.3) from Shewanella amazonensis

26% id,
96% cov

More...

SO3299: Pal/histidase family protein (NCBI ptt file)
is similar to:
PaperBLAST

Pf6N2E2_3799: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens

27% id,
97% cov

PfGW456L13_320: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens

27% id,
97% cov

HUTH_PSEPU / P21310: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Pseudomonas putida
hutH / P21310: histidase subunit (EC 4.3.1.3) from Pseudomonas putida
P21310: histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas putida

27% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory