Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 40 curated entries in PaperBLAST's database that match '4.3.3.7' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO1879: dihydrodipicolinate synthase (NCBI ptt file)
is similar to:
PaperBLAST

A5F699: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Vibrio cholerae

60% id,
100% cov

DAPA_PSEAE / Q9I4W3: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Pseudomonas aeruginosa
Q9I4W3: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Pseudomonas aeruginosa

56% id,
99% cov

DAPA_ECOLI / P0A6L2: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Escherichia coli
DapA / b2478: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Escherichia coli
dapA / P0A6L2: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Escherichia coli
P0A6L2: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Escherichia coli

51% id,
100% cov

More...

SO_1140: dihydrodipicolinate reductase (RefSeq)
is similar to:
PaperBLAST

Q3MFY8: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Trichormus variabilis

31% id,
100% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory