Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 45 curated entries in PaperBLAST's database that match '4.4.1.13' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO2191: cystathionine beta-lyase (NCBI ptt file)
is similar to:		 PaperBLAST

METC_ECOLI / P06721: Cystathionine beta-lyase MetC; CBL; CL; Beta-cystathionase MetC; Cysteine desulfhydrase MetC; CD; Cysteine lyase MetC; Cysteine-S-conjugate beta-lyase MetC; EC 4.4.1.13; EC 4.4.1.28 from Escherichia coli
MetC / b3008: cystathionine β-lyase / L-cysteine desulfhydrase / alanine racemase (EC 4.4.1.13; EC 4.4.1.1; EC 4.4.1.28; EC 5.1.1.1) from Escherichia coli
metC / P06721: cystathionine β-lyase / L-cysteine desulfhydrase / alanine racemase (EC 4.4.1.13; EC 4.4.1.1; EC 5.1.1.10) from Escherichia coli

 53% id,
100% cov

METC_YEAST / P43623: Putative cystathionine beta-lyase; CBL; Beta-cystathionase; Cysteine lyase; Cysteine-S-conjugate beta-lyase; Increased recombination centers protein 7; EC 4.4.1.13 from Saccharomyces cerevisiae
IRC7 / P43623: cysteine-S-conjugate β-lyase monomer (EC 4.4.1.13; EC 4.4.1.1) from Saccharomyces cerevisiae
P43623: cysteine-S-conjugate beta-lyase (EC 4.4.1.13) from Saccharomyces cerevisiae

 48% id,
98% cov

METC_BORAV / Q07703: Cystathionine beta-lyase; CBL; Beta-cystathionase; Cysteine lyase; Cysteine-S-conjugate beta-lyase; Osteotoxin; EC 4.4.1.13 from Bordetella avium

 42% id,
92% cov

More...

SO4056: cystathionine gamma-synthase (NCBI ptt file)
is similar to:		 PaperBLAST

A2RM21: cystathionine gamma-lyase (EC 4.4.1.1); cysteine-S-conjugate beta-lyase (EC 4.4.1.13) from Lactococcus lactis

 46% id,
99% cov

METC_COXBU / Q83A83: Cystathionine beta-lyase; CBL; Beta-cystathionase; Cysteine lyase; Cysteine-S-conjugate beta-lyase; EC 4.4.1.13 from Coxiella burnetii

 44% id,
98% cov

METC_BACSU / O31632: Cystathionine beta-lyase MetC; CBL; Beta-cystathionase MetC; Cysteine lyase MetC; Cysteine-S-conjugate beta-lyase MetC; EC 4.4.1.13 from Bacillus subtilis

 43% id,
97% cov

More...

SO1812: methionine gamma-lyase (NCBI ptt file)
is similar to:		 PaperBLAST

A2RM21: cystathionine gamma-lyase (EC 4.4.1.1); cysteine-S-conjugate beta-lyase (EC 4.4.1.13) from Lactococcus lactis

 45% id,
99% cov

METC_COXBU / Q83A83: Cystathionine beta-lyase; CBL; Beta-cystathionase; Cysteine lyase; Cysteine-S-conjugate beta-lyase; EC 4.4.1.13 from Coxiella burnetii

 42% id,
100% cov

METC_BACSU / O31632: Cystathionine beta-lyase MetC; CBL; Beta-cystathionase MetC; Cysteine lyase MetC; Cysteine-S-conjugate beta-lyase MetC; EC 4.4.1.13 from Bacillus subtilis

 43% id,
98% cov

More...

SO1095: O-acetylhomoserine (thiol)-lyase, putative (NCBI ptt file)
is similar to:		 PaperBLAST

METC_BACSU / O31632: Cystathionine beta-lyase MetC; CBL; Beta-cystathionase MetC; Cysteine lyase MetC; Cysteine-S-conjugate beta-lyase MetC; EC 4.4.1.13 from Bacillus subtilis

 31% id,
96% cov

METC_COXBU / Q83A83: Cystathionine beta-lyase; CBL; Beta-cystathionase; Cysteine lyase; Cysteine-S-conjugate beta-lyase; EC 4.4.1.13 from Coxiella burnetii

 39% id,
54% cov

Q73GL9: cysteine-S-conjugate beta-lyase (EC 4.4.1.13); alanine racemase (EC 5.1.1.1); glutamate racemase (EC 5.1.1.3) from Wolbachia pipientis

 26% id,
81% cov

More...

SO2903: cysteine synthase A (NCBI ptt file)
is similar to:		 PaperBLAST

Q9EYM7: cysteine-S-conjugate beta-lyase (EC 4.4.1.13) from Streptomyces venezuelae

 40% id,
66% cov

SO3598: cysteine synthase B (NCBI ptt file)
is similar to:		 PaperBLAST

Q9EYM7: cysteine-S-conjugate beta-lyase (EC 4.4.1.13) from Streptomyces venezuelae

 40% id,
65% cov

SO2483: aspartate aminotransferase, putative (NCBI ptt file)
is similar to:		 PaperBLAST

CBL_BACSU / Q08432: Cystathionine beta-lyase PatB; CBL; Beta-cystathionase PatB; Cysteine lyase PatB; Cysteine-S-conjugate beta-lyase PatB; EC 4.4.1.13 from Bacillus subtilis

 27% id,
83% cov

SUR1 / Q9SIV0: alkyl-thiohydroximate C-S lyase (EC 4.4.1.13) from Arabidopsis thaliana

 25% id,
81% cov

KAT3_MOUSE / Q71RI9: Kynurenine--oxoglutarate transaminase 3; Cysteine-S-conjugate beta-lyase 2; Kynurenine aminotransferase 3; Kynurenine aminotransferase III; KATIII; Kynurenine--glyoxylate transaminase; Kynurenine--oxoglutarate transaminase III; EC 2.6.1.7; EC 4.4.1.13; EC 2.6.1.63 from Mus musculus
Q71RI9: glutamine-pyruvate transaminase (EC 2.6.1.15); kynurenine-oxoglutarate transaminase (EC 2.6.1.7); cysteine-S-conjugate beta-lyase (EC 4.4.1.13) from Mus musculus

 26% id,
72% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory