Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 18 curated entries in PaperBLAST's database that match '5.4.2.7'.

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO1219: phosphopentomutase (NCBI ptt file)
is similar to:
PaperBLAST

SO1219: Phosphopentomutase (EC 5.4.2.7) from Shewanella oneidensis

100% id,
100% cov

Tlr / b4383: phosphopentomutase (EC 5.4.2.7) from Escherichia coli
deoB / RF|NP_418800: phosphopentomutase; EC 5.4.2.7 from Escherichia coli
deoB: phosphopentomutase; EC 5.4.2.7 from Escherichia coli
deoB / P0A6K6: phosphopentomutase (EC 5.4.2.7) from Escherichia coli
P0A6K6: phosphopentomutase (EC 5.4.2.7) from Escherichia coli

71% id,
100% cov

Dshi_0829: Phosphopentomutase (EC 5.4.2.7) from Dinoroseobacter shibae

49% id,
100% cov

More...

SO1755: phosphoglucomutase/phosphomannomutase family protein (NCBI ptt file)
is similar to:
PaperBLAST

PGM3_SCHPO / O74478: Probable phosphoribomutase; PRM; Phosphoglucomutase 3 homolog; PGM 3 homolog; EC 5.4.2.7 from Schizosaccharomyces pombe

38% id,
98% cov

PGM2_HUMAN / Q96G03: Phosphopentomutase; Glucose phosphomutase 2; Phosphodeoxyribomutase; Phosphoglucomutase-2; EC 5.4.2.7; EC 5.4.2.2 from Homo sapiens
PGM2 / Q96G03: phosphoglucomutase-2 (EC 5.4.2.2; EC 5.4.2.7) from Homo sapiens

38% id,
93% cov

PGM3_YEAST / Q03262: Phosphoribomutase; PRM; Phosphoglucomutase 3; PGM 3; EC 5.4.2.7 from Saccharomyces cerevisiae

36% id,
95% cov

More...

SO1199: phosphoglucosamine mutase (NCBI ptt file)
is similar to:
PaperBLAST

PPM_THEKO / Q6I7B6: Phosphopentomutase; PPM; EC 5.4.2.7 from Thermococcus kodakarensis
Q6I7B6: phosphopentomutase (EC 5.4.2.7) from Thermococcus kodakarensis

29% id,
94% cov

PGM3_SCHPO / O74478: Probable phosphoribomutase; PRM; Phosphoglucomutase 3 homolog; PGM 3 homolog; EC 5.4.2.7 from Schizosaccharomyces pombe

26% id,
50% cov

PGM2_MOUSE / Q7TSV4: Phosphopentomutase; Glucose phosphomutase 2; Phosphodeoxyribomutase; Phosphoglucomutase-1; Phosphoglucomutase-2; PGM 2; EC 5.4.2.7; EC 5.4.2.2 from Mus musculus

30% id,
24% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory