Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 186 curated entries in PaperBLAST's database that match '6.2.1.1'.

These curated entries have 142 distinct sequences.

Running ublast with E ≤ 0.01

Found 12 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO2743: acetyl-coenzyme A synthetase (NCBI ptt file)
is similar to:
PaperBLAST

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

70% id,
100% cov

ACSA_ECOLI / P27550: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Escherichia coli
AcsA / b4069: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.1; EC 6.2.1.17) from Escherichia coli
acs / P27550: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.17; EC 6.2.1.1) from Escherichia coli

70% id,
99% cov

AO353_03060: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

70% id,
100% cov

More...

SO1971: AMP-binding family protein (NCBI ptt file)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

55% id,
99% cov

F1CYZ6: 4-coumarate-CoA ligase (EC 6.2.1.12) from Acetobacterium woodii

31% id,
98% cov

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

29% id,
96% cov

More...

SO2116: acetyltransferase, GNAT family (NCBI ptt file)
is similar to:
PaperBLAST

C4LUV9: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

36% id,
99% cov

Q9NAT4: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

36% id,
99% cov

ACDA1_PYRFU / E7FI45: Acetate--CoA ligase [ADP-forming] I subunit alpha; ADP-forming acetyl coenzyme A synthetase I subunit alpha; ACS I subunit alpha; EC 6.2.1.13 from Pyrococcus furiosus
acdA / E7FI45: acetate-CoA ligase α subunit (EC 6.2.1.13) from Pyrococcus furiosus

34% id,
98% cov

More...

SO2581: long-chain-fatty-acid--CoA ligase (NCBI ptt file)
is similar to:
PaperBLAST

O24146: 4-coumarate-CoA ligase (EC 6.2.1.12) from Nicotiana tabacum

32% id,
95% cov

B8QN50: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pinus radiata

30% id,
98% cov

P41636: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pinus taeda

30% id,
98% cov

More...

SO1933: succinyl-CoA synthase, alpha subunit (NCBI ptt file)
is similar to:
PaperBLAST

ccsB / Q75VW6: citryl-CoA synthetase small subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW6: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

36% id,
82% cov

SO1932: succinyl-CoA synthase, beta subunit (NCBI ptt file)
is similar to:
PaperBLAST

ccsA / Q75VW8: citryl-CoA synthetase large subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW8: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

31% id,
93% cov

SO3664: long-chain-fatty-acid--CoA ligase (NCBI ptt file)
is similar to:
PaperBLAST

B3TJI5: 4-coumarate-CoA ligase (EC 6.2.1.12) from Ruta graveolens

32% id,
90% cov

B7SBA2: 4-coumarate-CoA ligase (EC 6.2.1.12) from Physcomitrella patens

31% id,
90% cov

CCL1_HUMLU / M4ISH0: 4-coumarate--CoA ligase CCL1; HlCCL1; EC 6.2.1.12 from Humulus lupulus

31% id,
92% cov

More...

SO0075: AMP-binding family protein (NCBI ptt file)
is similar to:
PaperBLAST

ACSL5_RAT / O88813: Long-chain-fatty-acid--CoA ligase 5; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 5; LACS 5; EC 6.2.1.3; EC 6.2.1.15 from Rattus norvegicus

31% id,
85% cov

ACSL1_HUMAN / P33121: Long-chain-fatty-acid--CoA ligase 1; Acyl-CoA synthetase 1; ACS1; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 1; LACS 1; Long-chain acyl-CoA synthetase 2; LACS 2; Long-chain fatty acid-CoA ligase 2; Palmitoyl-CoA ligase 1; Palmitoyl-CoA ligase 2; Phytanate--CoA ligase; EC 6.2.1.3; EC 6.2.1.15; EC 6.2.1.24 from Homo sapiens
ACSL1 / P33121: long-chain-fatty-acid--CoA ligase 1 (EC 6.2.1.3; EC 6.2.1.15) from Homo sapiens

31% id,
83% cov

ACSL1_RAT / P18163: Long-chain-fatty-acid--CoA ligase 1; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 1; LACS 1; Long-chain-fatty-acid--CoA ligase, liver isozyme; Phytanate--CoA ligase; EC 6.2.1.3; EC 6.2.1.15; EC 6.2.1.24 from Rattus norvegicus

30% id,
83% cov

More...

SO0355: AMP-binding protein (NCBI ptt file)
is similar to:
PaperBLAST

ACSL5_HUMAN / Q9ULC5: Long-chain-fatty-acid--CoA ligase 5; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 5; LACS 5; EC 6.2.1.3; EC 6.2.1.15 from Homo sapiens

29% id,
85% cov

ACSL6_HUMAN / Q9UKU0: Long-chain-fatty-acid--CoA ligase 6; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 6; LACS 6; EC 6.2.1.3; EC 6.2.1.15 from Homo sapiens
ACSL6 / Q9UKU0: long-chain acyl-CoA synthetase 6 (EC 6.2.1.15) from Homo sapiens

28% id,
84% cov

ACSL6_RAT / P33124: Long-chain-fatty-acid--CoA ligase 6; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 6; LACS 6; Long-chain-fatty-acid--CoA ligase, brain isozyme; EC 6.2.1.3; EC 6.2.1.15 from Rattus norvegicus

27% id,
84% cov

More...

SO1744: AMP-binding protein (NCBI ptt file)
is similar to:
PaperBLAST

4CL1_NARPS / A0A2H5AIX5: 4-coumarate-CoA ligase 1; EC 6.2.1.12 from Narcissus pseudonarcissus

22% id,
97% cov

U3MNX0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pueraria montana

24% id,
84% cov

S4WX39: 4-coumarate-CoA ligase (EC 6.2.1.12) from Ocimum basilicum

21% id,
94% cov

More...

SO4576: O-succinylbenzoic acid--CoA ligase, putative (NCBI ptt file)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

30% id,
56% cov

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

24% id,
71% cov

ACSM3_MOUSE / Q3UNX5: Acyl-coenzyme A synthetase ACSM3, mitochondrial; Acyl-CoA synthetase medium-chain family member 3; Butyrate--CoA ligase 3; Butyryl-coenzyme A synthetase 3; Middle-chain acyl-CoA synthetase 3; Propionate--CoA ligase; Protein SA homolog; EC 6.2.1.2; EC 6.2.1.17 from Mus musculus

24% id,
60% cov

More...

SO4371: conserved hypothetical protein (NCBI ptt file)
is similar to:
PaperBLAST

A0A0D4C3L0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Plagiochasma appendiculatum

24% id,
22% cov

ACSA_ECOLI / P27550: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Escherichia coli
AcsA / b4069: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.1; EC 6.2.1.17) from Escherichia coli
acs / P27550: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.17; EC 6.2.1.1) from Escherichia coli

25% id,
18% cov

ACSA_SALTY / Q8ZKF6: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Salmonella typhimurium

25% id,
18% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 14 reading frames. Except for 4 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1998926-2000926 (frame +2) on 139
is similar to:
PaperBLAST

PGA1_c11900: Propionate--CoA ligase (EC 6.2.1.17) from Phaeobacter inhibens
Also see hits to annotated proteins above

60% id,
98% cov

prpE / Q5LPB4: propionate--CoA ligase (EC 6.2.1.17) from Ruegeria pomeroyi
Also see hits to annotated proteins above

59% id,
99% cov

ACSS3_RAT / A0A0G2K047: Acyl-CoA synthetase short-chain family member 3, mitochondrial; Acetate--CoA ligase 3; Acyl-CoA synthetase short-chain family member 3; Propionate--CoA ligase; EC 6.2.1.1; EC 6.2.1.17 from Rattus norvegicus
A0A0G2K047: propionate-CoA ligase (EC 6.2.1.17) from Rattus norvegicus
Also see hits to annotated proteins above

52% id,
93% cov

More...

2707892-2709571 (frame -3) on 139
is similar to:
PaperBLAST

O24146: 4-coumarate-CoA ligase (EC 6.2.1.12) from Nicotiana tabacum
Also see hits to annotated proteins above

32% id,
98% cov

4CL5_ORYSJ / Q6ZAC1: 4-coumarate--CoA ligase 5; 4CL 5; Os4CL5; 4-coumaroyl-CoA synthase 5; EC 6.2.1.12 from Oryza sativa
Q6ZAC1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa
Also see hits to annotated proteins above

29% id,
25% cov

4CL2_ORYSJ / Q42982: 4-coumarate--CoA ligase 2; 4CL 2; Os4CL2; 4-coumaroyl-CoA synthase 2; EC 6.2.1.12 from Oryza sativa
Q42982: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa
Also see hits to annotated proteins above

31% id,
22% cov

More...

2039641-2040528 (frame +1) on 139
is similar to:
PaperBLAST

ccsB / Q75VW6: citryl-CoA synthetase small subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW6: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus
Also see hits to annotated proteins above

35% id,
84% cov

362352-364055 (frame -2) on 139
is similar to:
PaperBLAST

ACSL5_HUMAN / Q9ULC5: Long-chain-fatty-acid--CoA ligase 5; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 5; LACS 5; EC 6.2.1.3; EC 6.2.1.15 from Homo sapiens
Also see hits to annotated proteins above

28% id,
91% cov

S27A4_MOUSE / Q91VE0: Long-chain fatty acid transport protein 4; FATP-4; Fatty acid transport protein 4; Arachidonate--CoA ligase; Long-chain-fatty-acid--CoA ligase; Solute carrier family 27 member 4; Very long-chain acyl-CoA synthetase 4; ACSVL4; EC 6.2.1.15; EC 6.2.1.- from Mus musculus
Also see hits to annotated proteins above

24% id,
75% cov

AEE7_ARATH / Q8VZF1: Acetate/butyrate--CoA ligase AAE7, peroxisomal; AMP-binding protein 7; AtAMPBP7; Acetyl-CoA synthetase; Acyl-activating enzyme 7; Butyryl-CoA synthetase; Protein ACETATE NON-UTILIZING 1; EC 6.2.1.1; EC 6.2.1.2 from Arabidopsis thaliana
Also see hits to annotated proteins above

21% id,
20% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory