Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 117 curated entries in PaperBLAST's database that match '6.3.1.2' as complete word(s).

These curated entries have 85 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO4410: glutamine synthetase, type I (NCBI ptt file) is similar to:	PaperBLAST
glnA: glutamate--ammonia ligase; EC 6.3.1.2 from Escherichia coli glnA / P0A9C5: glutamine synthetase (EC 6.3.1.2) from Escherichia coli	78% id, 100% cov
GLN1B_SALTY / P0A1P6: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Salmonella typhimurium glnA: glutamate--ammonia ligase; EC 6.3.1.2 from Salmonella enterica P0A1P6: glutamine synthetase (EC 6.3.1.2) from Salmonella enterica	77% id, 100% cov
GLN1B_PSETA / Q3V5W6: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Pseudomonas taetrolens	69% id, 99% cov
GLN1B_SYNY3 / P77961: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Synechocystis sp. P77961: glutamine synthetase (EC 6.3.1.2) from Synechocystis sp.	57% id, 99% cov
GLN1B_NOSS1 / P00964: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Nostoc sp.	55% id, 99% cov
Q9RHZ1: glutamine synthetase (EC 6.3.1.2) from Trichormus azollae	55% id, 99% cov
GLN1B_STRCO / P15106: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Streptomyces coelicolor P15106: glutamine synthetase (EC 6.3.1.2) from Streptomyces coelicolor	54% id, 100% cov
GLN1B_MYCBO / P0A591: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Mycobacterium bovis GLN1B_MYCTU / P9WN39: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Mycobacterium tuberculosis P0A591: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis P9WN39: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis	52% id, 99% cov
O85177: glutamine synthetase (EC 6.3.1.2) from Amycolatopsis mediterranei	49% id, 99% cov
GLNA_SULAC / Q9HH09: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Sulfolobus acidocaldarius Q9HH09: glutamine synthetase (EC 6.3.1.2) from Sulfolobus acidocaldarius	45% id, 98% cov
GLNA1_METMA / Q8PY99: Glutamine synthetase; GS; Glutamate--ammonia ligase; EC 6.3.1.2 from Methanosarcina mazei Q8PY99: glutamine synthetase (EC 6.3.1.2) from Methanosarcina mazei	42% id, 98% cov
GLN1A_BACSU / P12425: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Bacillus subtilis P12425: glutamine synthetase (EC 6.3.1.2) from Bacillus subtilis	40% id, 98% cov
GLNA_THEKO / O08467: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Thermococcus kodakarensis O08467: glutamine synthetase (EC 6.3.1.2) from Pyrococcus sp.	39% id, 97% cov
GLNA_ARCFU / O29313: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Archaeoglobus fulgidus O29313: glutamine synthetase (EC 6.3.1.2) from Archaeoglobus fulgidus	38% id, 98% cov
P64246: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis	35% id, 99% cov
P36687: glutamine synthetase (EC 6.3.1.2) from Pyrococcus woesei	44% id, 68% cov
F2RM17: glutamine synthetase (EC 6.3.1.2) from Haloferax mediterranei	31% id, 96% cov
P36205: glutamine synthetase (EC 6.3.1.2) from Thermotoga maritima	44% id, 65% cov
C4L2T5: glutamine synthetase (EC 6.3.1.2) from Exiguobacterium sp.	43% id, 65% cov
GLNA_METJA / Q60182: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Methanocaldococcus jannaschii Q60182: glutamine synthetase (EC 6.3.1.2) from Methanocaldococcus jannaschii	45% id, 62% cov
Q0E5H7: glutamine synthetase (EC 6.3.1.2) from Halobacillus halophilus	45% id, 61% cov
GLNA_THET8 / Q5SIP0: Glutamine synthetase; GS; Glutamate--ammonia ligase; EC 6.3.1.2 from Thermus thermophilus	42% id, 65% cov
GLNA3_HALMT / I3R176: Glutamine synthetase 3; GS3; Glutamate--ammonia ligase; EC 6.3.1.2 from Haloferax mediterranei B8ZJH0: glutamine synthetase (EC 6.3.1.2) from Haloferax mediterranei	42% id, 63% cov
GLNA3_RHIME / O87393: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase III; GSIII; EC 6.3.1.2 from Rhizobium meliloti	35% id, 60% cov
Q86ZU6: glutamine synthetase (EC 6.3.1.2) from Tuber borchii	27% id, 51% cov
Q0E5H7: glutamine synthetase (EC 6.3.1.2) from Halobacillus halophilus	40% id, 34% cov
Q1MXG4: glutamine synthetase (EC 6.3.1.2) from Enchytraeus japonensis	27% id, 49% cov
GLNA_METJA / Q60182: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Methanocaldococcus jannaschii Q60182: glutamine synthetase (EC 6.3.1.2) from Methanocaldococcus jannaschii	38% id, 31% cov
P36205: glutamine synthetase (EC 6.3.1.2) from Thermotoga maritima	38% id, 31% cov
More...

SO1268: glutamine synthetase (NCBI ptt file) is similar to:	PaperBLAST
P64246: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis	30% id, 98% cov
P36687: glutamine synthetase (EC 6.3.1.2) from Pyrococcus woesei	30% id, 99% cov
O33342: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis	31% id, 95% cov
GLNA_METJA / Q60182: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Methanocaldococcus jannaschii Q60182: glutamine synthetase (EC 6.3.1.2) from Methanocaldococcus jannaschii	30% id, 97% cov
GLNA1_METMA / Q8PY99: Glutamine synthetase; GS; Glutamate--ammonia ligase; EC 6.3.1.2 from Methanosarcina mazei Q8PY99: glutamine synthetase (EC 6.3.1.2) from Methanosarcina mazei	30% id, 96% cov
P36205: glutamine synthetase (EC 6.3.1.2) from Thermotoga maritima	29% id, 98% cov
GLN1A_BACSU / P12425: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Bacillus subtilis P12425: glutamine synthetase (EC 6.3.1.2) from Bacillus subtilis	29% id, 97% cov
Q0E5H7: glutamine synthetase (EC 6.3.1.2) from Halobacillus halophilus	29% id, 96% cov
C4L2T5: glutamine synthetase (EC 6.3.1.2) from Exiguobacterium sp.	29% id, 96% cov
GLNA3_HALMT / I3R176: Glutamine synthetase 3; GS3; Glutamate--ammonia ligase; EC 6.3.1.2 from Haloferax mediterranei B8ZJH0: glutamine synthetase (EC 6.3.1.2) from Haloferax mediterranei	31% id, 89% cov
GLNA_SULAC / Q9HH09: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Sulfolobus acidocaldarius Q9HH09: glutamine synthetase (EC 6.3.1.2) from Sulfolobus acidocaldarius	28% id, 95% cov
GLNA_THEKO / O08467: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Thermococcus kodakarensis O08467: glutamine synthetase (EC 6.3.1.2) from Pyrococcus sp.	29% id, 89% cov
GLN1B_STRCO / P15106: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Streptomyces coelicolor P15106: glutamine synthetase (EC 6.3.1.2) from Streptomyces coelicolor	28% id, 91% cov
GLNA_ARCFU / O29313: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Archaeoglobus fulgidus O29313: glutamine synthetase (EC 6.3.1.2) from Archaeoglobus fulgidus	27% id, 95% cov
GLN1B_SALTY / P0A1P6: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Salmonella typhimurium glnA: glutamate--ammonia ligase; EC 6.3.1.2 from Salmonella enterica P0A1P6: glutamine synthetase (EC 6.3.1.2) from Salmonella enterica	27% id, 96% cov
GLN1B_PSETA / Q3V5W6: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Pseudomonas taetrolens	26% id, 95% cov
GLN1B_NOSS1 / P00964: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Nostoc sp.	28% id, 91% cov
GLN1B_MYCBO / P0A591: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Mycobacterium bovis GLN1B_MYCTU / P9WN39: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Mycobacterium tuberculosis P0A591: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis P9WN39: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis	26% id, 91% cov
glnA: glutamate--ammonia ligase; EC 6.3.1.2 from Escherichia coli glnA / P0A9C5: glutamine synthetase (EC 6.3.1.2) from Escherichia coli	31% id, 61% cov
Q9RHZ1: glutamine synthetase (EC 6.3.1.2) from Trichormus azollae	33% id, 58% cov
GLN1B_SYNY3 / P77961: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Synechocystis sp. P77961: glutamine synthetase (EC 6.3.1.2) from Synechocystis sp.	34% id, 47% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory