Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 2 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase%LeuC' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO4234: 3-isopropylmalate dehydratase, large subunit (NCBI ptt file)
is similar to:
PaperBLAST

LeuC / b0072: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli
leuC / P0A6A6: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli

74% id,
99% cov

SO0343: aconitate hydratase 1 (NCBI ptt file)
is similar to:
PaperBLAST

LeuC / b0072: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli
leuC / P0A6A6: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli

26% id,
95% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory