Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 8 curated entries in PaperBLAST's database that match 'anthranilate synthase component I' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO3019: anthranilate synthase component I (NCBI ptt file)
is similar to:
PaperBLAST

trpE / AAD09116.1: anthranilate synthase component I from Rhodobacter sphaeroides

37% id,
94% cov

trpE / Q08653: anthranilate synthase component I (EC 4.1.3.27) from Thermotoga maritima

36% id,
90% cov

7bvdA / A0QX93: Anthranilate synthase component i (trpe)[mycolicibacterium smegmatis]

39% id,
81% cov

More...

SO2221: para-aminobenzoate synthase, component I (NCBI ptt file)
is similar to:
PaperBLAST

trpE / Q08653: anthranilate synthase component I (EC 4.1.3.27) from Thermotoga maritima

31% id,
92% cov

5cwaA / P9WFX2: Structure of anthranilate synthase component i (trpe) from mycobacterium tuberculosis with inhibitor bound

31% id,
89% cov

trpE / BAC65122.2: anthranilate synthase component I from Burkholderia multivorans

36% id,
75% cov

More...

SO4713: menaquinone-specific isochorismate synthase, putative (NCBI ptt file)
is similar to:
PaperBLAST

trpE: anthranilate synthase component I; EC 4.1.3.27 from Leptospira biflexa

27% id,
66% cov

trpE / AAD09116.1: anthranilate synthase component I from Rhodobacter sphaeroides

30% id,
58% cov

7bvdA / A0QX93: Anthranilate synthase component i (trpe)[mycolicibacterium smegmatis]

27% id,
63% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory