Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 6 curated entries in PaperBLAST's database that match 'carbamoyl-phosphate synthase%small' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO1141: carbamoyl-phosphate synthase, small subunit (NCBI ptt file)
is similar to:
PaperBLAST

CARA_ECOLI / P0A6F1: Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 from Escherichia coli

76% id,
100% cov

CARA_BACSU / P25993: Carbamoyl-phosphate synthase pyrimidine-specific small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 from Bacillus subtilis

47% id,
95% cov

CARA_ARATH / Q9LVW7: Carbamoyl-phosphate synthase small chain, chloroplastic; Carbamoyl-phosphate synthetase glutamine chain; Protein VENOSA 6; EC 6.3.5.5 from Arabidopsis thaliana

46% id,
87% cov

More...

SO0613: para-aminobenzoate synthase glutamine amidotransferase, component II (NCBI ptt file)
is similar to:
PaperBLAST

CARA_BACSU / P25993: Carbamoyl-phosphate synthase pyrimidine-specific small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 from Bacillus subtilis

30% id,
43% cov

carA / CAA68238.2: carbamoyl-phosphate synthase small subunit from Lactobacillus plantarum

29% id,
42% cov

CARA_ECOLI / P0A6F1: Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 from Escherichia coli

28% id,
35% cov

More...

SO3020: glutamine amido-transferase (NCBI ptt file)
is similar to:
PaperBLAST

CARA_BACSU / P25993: Carbamoyl-phosphate synthase pyrimidine-specific small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 from Bacillus subtilis

27% id,
45% cov

carA / CAA68238.2: carbamoyl-phosphate synthase small subunit from Lactobacillus plantarum

25% id,
43% cov

CARA_ARATH / Q9LVW7: Carbamoyl-phosphate synthase small chain, chloroplastic; Carbamoyl-phosphate synthetase glutamine chain; Protein VENOSA 6; EC 6.3.5.5 from Arabidopsis thaliana

26% id,
39% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory