Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella oneidensis MR-1 (MR1)

Found 28 curated entries in PaperBLAST's database that match 'cystathionine gamma-lyase' as complete word(s).

These curated entries have 25 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Shewanella oneidensis MR-1, or try another query

SO2903: cysteine synthase A (NCBI ptt file)
is similar to:		 PaperBLAST

CGL_ARATH / F4K5T2: Bifunctional cystathionine gamma-lyase/cysteine synthase; Beta-substituted Ala synthase 4;3; ARAth-Bsas4;3; L-cysteine desulfhydrase 1; DES1; O-acetylserine (thiol)-lyase; OASTL; Protein CS-LIKE; EC 2.5.1.47; EC 4.4.1.1 from Arabidopsis thaliana

 51% id,
97% cov

SO4056: cystathionine gamma-synthase (NCBI ptt file)
is similar to:		 PaperBLAST

6k1lA / B4SII9: E53a mutant of a putative cystathionine gamma-lyase

 46% id,
99% cov

A2RM21: cystathionine gamma-lyase (EC 4.4.1.1); cysteine-S-conjugate beta-lyase (EC 4.4.1.13) from Lactococcus lactis

 46% id,
99% cov

Q5H4T8: cystathionine gamma-lyase (EC 4.4.1.1) from Xanthomonas oryzae

 46% id,
95% cov

More...

SO1812: methionine gamma-lyase (NCBI ptt file)
is similar to:		 PaperBLAST

A2RM21: cystathionine gamma-lyase (EC 4.4.1.1); cysteine-S-conjugate beta-lyase (EC 4.4.1.13) from Lactococcus lactis

 45% id,
99% cov

MCCB_BACSU / O05394: Cystathionine gamma-lyase; Gamma-cystathionase; Homocysteine gamma-lyase; EC 4.4.1.1; EC 4.4.1.2 from Bacillus subtilis

 45% id,
99% cov

metB / P56069: cystathionine gamma-lyase (EC 4.4.1.1) from Helicobacter pylori

 45% id,
99% cov

More...

SO3598: cysteine synthase B (NCBI ptt file)
is similar to:		 PaperBLAST

CGL_ARATH / F4K5T2: Bifunctional cystathionine gamma-lyase/cysteine synthase; Beta-substituted Ala synthase 4;3; ARAth-Bsas4;3; L-cysteine desulfhydrase 1; DES1; O-acetylserine (thiol)-lyase; OASTL; Protein CS-LIKE; EC 2.5.1.47; EC 4.4.1.1 from Arabidopsis thaliana

 38% id,
93% cov

SO2191: cystathionine beta-lyase (NCBI ptt file)
is similar to:		 PaperBLAST

metB / P56069: cystathionine gamma-lyase (EC 4.4.1.1) from Helicobacter pylori

 35% id,
100% cov

MCCB_BACSU / O05394: Cystathionine gamma-lyase; Gamma-cystathionase; Homocysteine gamma-lyase; EC 4.4.1.1; EC 4.4.1.2 from Bacillus subtilis

 33% id,
96% cov

A2RM21: cystathionine gamma-lyase (EC 4.4.1.1); cysteine-S-conjugate beta-lyase (EC 4.4.1.13) from Lactococcus lactis

 32% id,
99% cov

More...

SO1095: O-acetylhomoserine (thiol)-lyase, putative (NCBI ptt file)
is similar to:		 PaperBLAST

6k1lA / B4SII9: E53a mutant of a putative cystathionine gamma-lyase

 31% id,
99% cov

Q5H4T8: cystathionine gamma-lyase (EC 4.4.1.1) from Xanthomonas oryzae

 32% id,
96% cov

CGL_DICDI / Q55DV9: Cystathionine gamma-lyase; CGL; CSE; Cysteine desulfhydrase; Cysteine-protein sulfhydrase; Gamma-cystathionase; Homocysteine desulfhydrase; EC 4.4.1.1; EC 4.4.1.2 from Dictyostelium discoideum

 30% id,
98% cov

More...

SO1664: UDP-glucose 4-epimerase (NCBI ptt file)
is similar to:		 PaperBLAST

Q5H4T8: cystathionine gamma-lyase (EC 4.4.1.1) from Xanthomonas oryzae

 40% id,
12% cov

6k1lA / B4SII9: E53a mutant of a putative cystathionine gamma-lyase

 38% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory