Curated BLAST for Genomes

 

Curated BLAST

Searching in Marinobacter adhaerens HP15 (Marino)

Found 7 curated entries in PaperBLAST's database that match '1.1.1.87' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Marinobacter adhaerens HP15, or try another query

HP15_1832: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

hicdh / Q5SIJ1: homoisocitrate dehydrogenase subunit (EC 1.1.1.87) from Thermus thermophilus
Q5SIJ1: homoisocitrate dehydrogenase (EC 1.1.1.87) from Thermus thermophilus

39% id,
99% cov

AKSF_METJA / Q58991: Homoisocitrate dehydrogenase; HICDH; Homo(2)-isocitrate/homo(3)-isocitrate dehydrogenase; Isohomocitrate dehydrogenase; IHDH; NAD-dependent threo-isohomocitrate dehydrogenase; EC 1.1.1.87; EC 1.1.1.- from Methanocaldococcus jannaschii
aksF / Q58991: NAD-dependent threo-isocitrate dehydrogenase (EC 1.1.1.87) from Methanocaldococcus jannaschii

38% id,
96% cov

LYS12_SCHPO / O14104: Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.87 from Schizosaccharomyces pombe

36% id,
98% cov

More...

HP15_817: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

hicdh / Q5SIJ1: homoisocitrate dehydrogenase subunit (EC 1.1.1.87) from Thermus thermophilus
Q5SIJ1: homoisocitrate dehydrogenase (EC 1.1.1.87) from Thermus thermophilus

36% id,
94% cov

LYS12_SCHPO / O14104: Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.87 from Schizosaccharomyces pombe

31% id,
99% cov

AKSF_METJA / Q58991: Homoisocitrate dehydrogenase; HICDH; Homo(2)-isocitrate/homo(3)-isocitrate dehydrogenase; Isohomocitrate dehydrogenase; IHDH; NAD-dependent threo-isohomocitrate dehydrogenase; EC 1.1.1.87; EC 1.1.1.- from Methanocaldococcus jannaschii
aksF / Q58991: NAD-dependent threo-isocitrate dehydrogenase (EC 1.1.1.87) from Methanocaldococcus jannaschii

31% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory