Curated BLAST for Genomes

 

Curated BLAST

Searching in Marinobacter adhaerens HP15 (Marino)

Found 9 curated entries in PaperBLAST's database that match '1.1.5.2'.

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Marinobacter adhaerens HP15, or try another query

HP15_2199: glucose/sorbosone dehydrogenase
is similar to:
PaperBLAST

I7A144: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Thermus thermophilus

37% id,
98% cov

Q8ZUN8: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pyrobaculum aerophilum

37% id,
91% cov

DHGB_ACICA / P13650: Quinoprotein glucose dehydrogenase B; Glucose dehydrogenase B [pyrroloquinoline-quinone]; Soluble glucose dehydrogenase; s-GDH; EC 1.1.5.2 from Acinetobacter calcoaceticus
P13650: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2); soluble quinoprotein glucose dehydrogenase (EC 1.1.99.35) from Acinetobacter calcoaceticus

31% id,
57% cov

HP15_835: secreted protein containing glucose sorbosone dehydrogenase domain
is similar to:
PaperBLAST

I7A144: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Thermus thermophilus

37% id,
90% cov

Q8ZUN8: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pyrobaculum aerophilum

33% id,
91% cov

HP15_3160: quinoprotein alcohol dehydrogenase
is similar to:
PaperBLAST

DHG_ECOLI / P15877: Quinoprotein glucose dehydrogenase; Glucose dehydrogenase [pyrroloquinoline-quinone]; EC 1.1.5.2 from Escherichia coli
Gcd / b0124: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli
gcd / GB|BAB96699.1: quinoprotein glucose dehydrogenase; EC 1.1.5.2 from Escherichia coli
gcd / P15877: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli

26% id,
49% cov

D4P700: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pantoea ananatis

32% id,
14% cov

DHG_ECOLI / P15877: Quinoprotein glucose dehydrogenase; Glucose dehydrogenase [pyrroloquinoline-quinone]; EC 1.1.5.2 from Escherichia coli
Gcd / b0124: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli
gcd / GB|BAB96699.1: quinoprotein glucose dehydrogenase; EC 1.1.5.2 from Escherichia coli
gcd / P15877: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli

28% id,
14% cov

HP15_3164: quinoprotein alcohol dehydrogenase
is similar to:
PaperBLAST

DHG_ECOLI / P15877: Quinoprotein glucose dehydrogenase; Glucose dehydrogenase [pyrroloquinoline-quinone]; EC 1.1.5.2 from Escherichia coli
Gcd / b0124: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli
gcd / GB|BAB96699.1: quinoprotein glucose dehydrogenase; EC 1.1.5.2 from Escherichia coli
gcd / P15877: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli

25% id,
42% cov

D4P700: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pantoea ananatis

31% id,
12% cov

DHG_ECOLI / P15877: Quinoprotein glucose dehydrogenase; Glucose dehydrogenase [pyrroloquinoline-quinone]; EC 1.1.5.2 from Escherichia coli
Gcd / b0124: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli
gcd / GB|BAB96699.1: quinoprotein glucose dehydrogenase; EC 1.1.5.2 from Escherichia coli
gcd / P15877: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli

25% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory