Curated BLAST for Genomes

 

Curated BLAST

Searching in Marinobacter adhaerens HP15 (Marino)

Found 108 curated entries in PaperBLAST's database that match '1.4.1.2'.

These curated entries have 87 distinct sequences.

Running ublast with E ≤ 0.01

Found 15 relevant proteins in Marinobacter adhaerens HP15, or try another query

HP15_2269: NAD-specific glutamate dehydrogenase
is similar to:
PaperBLAST

DHE2_PSEAE / Q9HZE0: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Pseudomonas aeruginosa

52% id,
100% cov

Psest_1944: NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form from Pseudomonas stutzeri

52% id,
100% cov

DHE2_HALED / E1V4J5: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Halomonas elongata

50% id,
100% cov

More...

HP15_459: glycine cleavage H-protein, subgroup
is similar to:
PaperBLAST

P0A6T9: glycine cleavage system (subunit 2/3) (EC 1.4.1.27) from Escherichia coli

54% id,
95% cov

gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.

50% id,
92% cov

GCSH / A8HYD5: glycine cleavage system H protein (EC 1.4.1.27) from Chlamydomonas reinhardtii

56% id,
73% cov

More...

HP15_1523: dihydrolipoamide dehydrogenase
is similar to:
PaperBLAST

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

50% id,
91% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

48% id,
92% cov

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus

49% id,
91% cov

More...

HP15_2623: leucine dehydrogenase
is similar to:
PaperBLAST

VDH_STRCO / Q06539: Valine dehydrogenase; ValDH; EC 1.4.1.23 from Streptomyces coelicolor
vdh / Q06539: valine dehydrogenase monomer (EC 1.4.1.23) from Streptomyces coelicolor

43% id,
95% cov

DHPH_CALTT / F5L9G2: Phenylalanine dehydrogenase; PheDH; EC 1.4.1.20 from Caldalkalibacillus thermarum

43% id,
95% cov

VDH_STRA4 / O69056: Valine dehydrogenase; ValDH; EC 1.4.1.23 from Streptomyces albus

42% id,
96% cov

More...

HP15_65: dihydrolipoamide dehydrogenase
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

41% id,
95% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

41% id,
92% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

39% id,
93% cov

More...

HP15_2689: NAD-specific glutamate dehydrogenase
is similar to:
PaperBLAST

Psest_1944: NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form from Pseudomonas stutzeri

52% id,
70% cov

DHE2_PSEAE / Q9HZE0: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Pseudomonas aeruginosa

51% id,
70% cov

DHE2_HALED / E1V4J5: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Halomonas elongata

50% id,
69% cov

More...

HP15_194: mercuric ion reductase
is similar to:
PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

32% id,
92% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

33% id,
91% cov

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

30% id,
98% cov

More...

HP15_3849: pyridine nucleotide-disulfide oxidoreductase dimerization region
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

31% id,
95% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

32% id,
91% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

32% id,
90% cov

More...

HP15_1612: protein containing FAD-dependent pyridine nucleotide-disulfide oxidoreductase / Pyridine nucleotide-disulfide oxidoreductase, dimerization
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

30% id,
98% cov

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

30% id,
95% cov

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus

30% id,
90% cov

More...

HP15_2245: soluble pyridine nucleotide transhydrogenase
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

30% id,
95% cov

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

29% id,
99% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

32% id,
90% cov

More...

HP15_1657: dihydrolipoamide dehydrogenase
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

29% id,
99% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

30% id,
91% cov

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus

29% id,
91% cov

More...

HP15_3255: mercuric ion reductase
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

26% id,
98% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

28% id,
90% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

29% id,
90% cov

More...

HP15_64: catalytic domain of components of various dehydrogenase complexes
is similar to:
PaperBLAST

gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.

33% id,
47% cov

HP15_2580: 2,4-dienoyl-CoA reductase
is similar to:
PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

23% id,
60% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

26% id,
24% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

29% id,
18% cov

More...

HP15_3619: FAD-dependent pyridine nucleotide-disulfide oxidoreductase
is similar to:
PaperBLAST

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

24% id,
47% cov

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus

28% id,
29% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 14 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1605072-1606577 (frame +3) on CP001978
is similar to:
PaperBLAST

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana
Also see hits to annotated proteins above

47% id,
97% cov

181908-183443 (frame +3) on CP001978
is similar to:
PaperBLAST

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana
Also see hits to annotated proteins above

32% id,
96% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens
Also see hits to annotated proteins above

29% id,
95% cov

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus
Also see hits to annotated proteins above

29% id,
95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory