Curated BLAST for Genomes

 

Curated BLAST

Searching in Marinobacter adhaerens HP15 (Marino)

Found 43 curated entries in PaperBLAST's database that match '4.1.1.17'.

These curated entries have 31 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Marinobacter adhaerens HP15, or try another query

HP15_3785: ornithine decarboxylase
is similar to:
PaperBLAST

AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans

32% id,
82% cov

Q58P26: ornithine decarboxylase (EC 4.1.1.17) from Entamoeba histolytica

28% id,
90% cov

Q54UF3: ornithine decarboxylase (EC 4.1.1.17) from Dictyostelium discoideum

32% id,
79% cov

More...

HP15_247: diaminopimelate decarboxylase
is similar to:
PaperBLAST

DCOR_TRYBB / P07805: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Trypanosoma brucei

27% id,
96% cov

DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster

27% id,
89% cov

DCOR1_XENLA / P27120: Ornithine decarboxylase 1; ODC 1; xODC1; EC 4.1.1.17 from Xenopus laevis

26% id,
85% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory