Curated BLAST for Genomes

 

Curated BLAST

Searching in Marinobacter adhaerens HP15 (Marino)

Found 8 curated entries in PaperBLAST's database that match '4.1.1.77' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Marinobacter adhaerens HP15, or try another query

HP15_4037: hydratase/decarboxylase
is similar to:
PaperBLAST

xylI / P49155: 4-oxalocrotonate decarboxylase subunit (EC 4.1.1.77) from Pseudomonas putida

86% id,
100% cov

Q1XGK3: 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Pseudomonas putida

85% id,
100% cov

cnbF / Q38M37: 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Comamonas testosteroni

62% id,
99% cov

More...

HP15_1116: hydratase/decarboxylase
is similar to:
PaperBLAST

Q1XGK3: 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Pseudomonas putida

85% id,
100% cov

xylI / P49155: 4-oxalocrotonate decarboxylase subunit (EC 4.1.1.77) from Pseudomonas putida

85% id,
100% cov

cnbF / Q38M37: 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Comamonas testosteroni

62% id,
99% cov

More...

HP15_1113: hydratase/decarboxylase
is similar to:
PaperBLAST

praD / C4TP06: 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Paenibacillus sp.

40% id,
97% cov

Q1XGK3: 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Pseudomonas putida

37% id,
98% cov

B0VXM8: 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Geobacillus stearothermophilus

38% id,
97% cov

More...

HP15_4034: hydratase/decarboxylase
is similar to:
PaperBLAST

praD / C4TP06: 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Paenibacillus sp.

40% id,
97% cov

Q1XGK3: 2-oxo-3-hexenedioate decarboxylase (EC 4.1.1.77) from Pseudomonas putida

38% id,
98% cov

xylI / P49155: 4-oxalocrotonate decarboxylase subunit (EC 4.1.1.77) from Pseudomonas putida

37% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory