Curated BLAST for Genomes

 

Curated BLAST

Searching in Marinobacter adhaerens HP15 (Marino)

Found 48 curated entries in PaperBLAST's database that match '4.1.3.1' as complete word(s).

These curated entries have 36 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Marinobacter adhaerens HP15, or try another query

HP15_3234: isocitrate lyase
is similar to:
PaperBLAST

Q9I0K4: isocitrate lyase (EC 4.1.3.1) from Pseudomonas aeruginosa

81% id,
99% cov

Psest_2014: Isocitrate lyase (EC 4.1.3.1) from Pseudomonas stutzeri

79% id,
99% cov

A8C781: isocitrate lyase (EC 4.1.3.1) from Azotobacter vinelandii

78% id,
99% cov

More...

HP15_1932: methylisocitrate lyase 2
is similar to:
PaperBLAST

Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus

38% id,
91% cov

ACEA_HALVD / D4GTL3: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Haloferax volcanii

34% id,
85% cov

BWI76_RS01665: Isocitrate lyase (EC 4.1.3.1) from Klebsiella michiganensis

29% id,
61% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory