Curated BLAST for Genomes

 

Curated BLAST

Searching in Marinobacter adhaerens HP15 (Marino)

Found 12 curated entries in PaperBLAST's database that match '4.1.3.17' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Marinobacter adhaerens HP15, or try another query

HP15_2228: ribonuclease activity regulator protein RraA
is similar to:
PaperBLAST

RRAAH_THET8 / Q5SIP7: 4-hydroxy-4-methyl-2-oxoglutarate aldolase; HMG aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; Regulator of ribonuclease activity homolog; EC 4.1.3.17; EC 4.1.1.112 from Thermus thermophilus

40% id,
93% cov

GALC_PSEPK / Q88JX9: 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase; CHA aldolase; Gallate degradation protein C; EC 4.1.3.17 from Pseudomonas putida
galC / Q88JX9: subunit of 4-hydroxy-4-methyl-2-oxoglutarate aldolase (EC 4.1.3.17) from Pseudomonas putida

30% id,
52% cov

LIGK_SPHSK / G2IQQ8: 4-carboxy-4-hydroxy-2-oxoadipate aldolase; CHA aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; EC 4.1.3.17; EC 4.1.1.112 from Sphingobium sp.

27% id,
56% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory