Curated BLAST for Genomes

 

Curated BLAST

Searching in Marinobacter adhaerens HP15 (Marino)

Found 22 curated entries in PaperBLAST's database that match '4.1.3.39'.

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Marinobacter adhaerens HP15, or try another query

HP15_4036: 4-hydroxy-2-ketovalerate aldolase
is similar to:
PaperBLAST

HOA_ECOLI / P51020: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Escherichia coli
MhpE / b0352: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli
mhpE / GB|BAA13057.1: 4-hydroxy-2-oxovalerate aldolase; EC 4.1.3.39 from Escherichia coli
mhpE / P51020: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli

87% id,
98% cov

xylK / P51019: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida

84% id,
100% cov

HOA_PSEUF / P51016: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Pseudomonas sp.
dmpG / P51016: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas sp.
P51016: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas sp.

84% id,
100% cov

More...

HP15_1115: 4-hydroxy-2-ketovalerate aldolase
is similar to:
PaperBLAST

HOA_ECOLI / P51020: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Escherichia coli
MhpE / b0352: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli
mhpE / GB|BAA13057.1: 4-hydroxy-2-oxovalerate aldolase; EC 4.1.3.39 from Escherichia coli
mhpE / P51020: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli

86% id,
98% cov

xylK / P51019: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida

84% id,
100% cov

HOA_PSEUF / P51016: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Pseudomonas sp.
dmpG / P51016: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas sp.
P51016: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas sp.

83% id,
100% cov

More...

HP15_4035: acetaldehyde dehydrogenase
is similar to:
PaperBLAST

Q2XQZ7: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas sp.

59% id,
95% cov

HP15_1114: acetaldehyde dehydrogenase
is similar to:
PaperBLAST

Q2XQZ7: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas sp.

59% id,
95% cov

HP15_3935: pyruvate carboxylase subunit B
is similar to:
PaperBLAST

P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida

26% id,
98% cov

HOA4_PARXL / P51015: 4-hydroxy-2-oxovalerate aldolase 4; HOA 4; 4-hydroxy-2-keto-pentanoic acid aldolase 4; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase 4; EC 4.1.3.39; EC 4.1.3.43 from Paraburkholderia xenovorans
bphI / GB|ABE37049.1: 4-hydroxy-2-oxovalerate aldolase; EC 4.1.3.39 from Burkholderia xenovorans
P51015: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39); 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Paraburkholderia xenovorans

23% id,
94% cov

HP15_538: 2-isopropylmalate synthase
is similar to:
PaperBLAST

HOA_THET8 / Q53WI0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39; EC 4.1.3.43 from Thermus thermophilus

29% id,
79% cov

HOA_ECOLI / P51020: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Escherichia coli
MhpE / b0352: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli
mhpE / GB|BAA13057.1: 4-hydroxy-2-oxovalerate aldolase; EC 4.1.3.39 from Escherichia coli
mhpE / P51020: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli

26% id,
87% cov

HOA_STRTE / Q9X9Q0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Streptomyces tendae

25% id,
76% cov

More...

HP15_1001: pyruvate carboxyltransferase
is similar to:
PaperBLAST

P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida

26% id,
75% cov

xylK / P51019: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida

26% id,
51% cov

HOA_ECOLI / P51020: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Escherichia coli
MhpE / b0352: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli
mhpE / GB|BAA13057.1: 4-hydroxy-2-oxovalerate aldolase; EC 4.1.3.39 from Escherichia coli
mhpE / P51020: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli

27% id,
45% cov

More...

HP15_4178: pyruvate carboxyltransferase
is similar to:
PaperBLAST

P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida

26% id,
75% cov

xylK / P51019: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida

26% id,
51% cov

HOA_ECOLI / P51020: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Escherichia coli
MhpE / b0352: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli
mhpE / GB|BAA13057.1: 4-hydroxy-2-oxovalerate aldolase; EC 4.1.3.39 from Escherichia coli
mhpE / P51020: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli

27% id,
45% cov

More...

HP15_2055: 2-isopropylmalate synthase
is similar to:
PaperBLAST

P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida

29% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory