Curated BLAST for Genomes

 

Curated BLAST

Searching in Marinobacter adhaerens HP15 (Marino)

Found 13 curated entries in PaperBLAST's database that match '4.2.1.25' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Marinobacter adhaerens HP15, or try another query

HP15_3363: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

SM_b20890: L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti

39% id,
97% cov

BPHYT_RS19730: L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans

38% id,
93% cov

AO356_24585: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens

38% id,
93% cov

More...

HP15_2174: 6-phosphogluconate dehydratase
is similar to:
PaperBLAST

Shewana3_2070: L-arabonate dehydratase (EC 4.2.1.25) from Shewanella sp.

30% id,
91% cov

AO356_24585: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens

30% id,
90% cov

BPHYT_RS19730: L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans

31% id,
84% cov

More...

HP15_595: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum
I9XDU6: L-Arabinonate dehydratase (EC 4.2.1.25) from Rhizobium leguminosarum

29% id,
70% cov

ARADA_AZOBR / Q1JUQ1: L-arabonate dehydratase; L-arabinonate dehydratase; EC 4.2.1.25 from Azospirillum brasilense

33% id,
59% cov

SM_b20890: L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti

33% id,
58% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

614598-616451 (frame -3) on CP001978
is similar to:
PaperBLAST

ARADA_AZOBR / Q1JUQ1: L-arabonate dehydratase; L-arabinonate dehydratase; EC 4.2.1.25 from Azospirillum brasilense
Also see hits to annotated proteins above

33% id,
62% cov

AO356_24585: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens
Also see hits to annotated proteins above

32% id,
61% cov

PfGW456L13_3320: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens
Also see hits to annotated proteins above

32% id,
61% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory