Curated BLAST for Genomes

 

Curated BLAST

Searching in Marinobacter adhaerens HP15 (Marino)

Found 15 curated entries in PaperBLAST's database that match '5.1.3.4' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Marinobacter adhaerens HP15, or try another query

HP15_1260: sugar aldolase
is similar to:
PaperBLAST

CA265_RS08620: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Pedobacter sp.

25% id,
88% cov

ARAD_ECOLI / P08203: L-ribulose-5-phosphate 4-epimerase AraD; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli
AraD / b0061: L-ribulose-5-phosphate 4-epimerase AraD (EC 5.1.3.4) from Escherichia coli
araD / GB|BAB96630.1: L-ribulose-5-phosphate 4-epimerase; EC 5.1.3.4 from Escherichia coli
araD / P08203: L-ribulose-5-phosphate 4-epimerase AraD (EC 5.1.3.4) from Escherichia coli

27% id,
79% cov

SGBE_ECOLI / P37680: L-ribulose-5-phosphate 4-epimerase SgbE; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli
YiaS / b3583: L-ribulose-5-phosphate 4-epimerase SgbE (EC 5.1.3.4) from Escherichia coli
sgbE / P37680: L-ribulose-5-phosphate 4-epimerase SgbE (EC 5.1.3.4) from Escherichia coli

29% id,
73% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory