Curated BLAST for Genomes

 

Curated BLAST

Searching in Marinobacter adhaerens HP15 (Marino)

Found 21 curated entries in PaperBLAST's database that match 'Glycine cleavage system H' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Marinobacter adhaerens HP15, or try another query

HP15_459: glycine cleavage H-protein, subgroup
is similar to:
PaperBLAST

GCSH_ECOLI / P0A6T9: Glycine cleavage system H protein from Escherichia coli
Gcv / b2904: glycine cleavage system H protein from Escherichia coli
gcvH / P0A6T9: glycine cleavage system H protein from Escherichia coli

54% id,
95% cov

GCSH_THET8 / Q5SKW9: Glycine cleavage system H protein from Thermus thermophilus

50% id,
98% cov

gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.

50% id,
92% cov

More...

HP15_64: catalytic domain of components of various dehydrogenase complexes
is similar to:
PaperBLAST

gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.

33% id,
47% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory