Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 6 curated entries in PaperBLAST's database that match '1.1.1.175' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_2444: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

32% id,
98% cov

XDH_CAUVC / Q9A9Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

30% id,
98% cov

DvMF_3100: 3-oxoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:
PaperBLAST

XDH_CAUVC / Q9A9Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

31% id,
94% cov

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

32% id,
92% cov

DvMF_0398: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

Ga0059261_1894: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis

30% id,
95% cov

XDH_CAUVC / Q9A9Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
XDH_CAUVN / B8H1Z0: D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides
CCNA_00864: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus
B8H1Z0: D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides

29% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory