Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 9 curated entries in PaperBLAST's database that match '1.1.1.31' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_2927: tartronate semialdehyde reductase (RefSeq)
is similar to:
PaperBLAST

AO353_05985: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas fluorescens

36% id,
100% cov

mmsB / Q76KL5: 3-hydroxyisobutyrate dehydrogenase subunit (EC 1.1.1.31) from Pseudomonas putida
Q76KL5: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas putida

36% id,
99% cov

Psest_2438: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas stutzeri

35% id,
99% cov

More...

DvMF_2320: 6-phosphogluconate dehydrogenase NAD-binding (RefSeq)
is similar to:
PaperBLAST

MMSB_PSEAE / P28811: 3-hydroxyisobutyrate dehydrogenase; HIBADH; EC 1.1.1.31 from Pseudomonas aeruginosa

34% id,
99% cov

Psest_2438: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas stutzeri

33% id,
98% cov

mmsB / Q76KL5: 3-hydroxyisobutyrate dehydrogenase subunit (EC 1.1.1.31) from Pseudomonas putida
Q76KL5: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas putida

33% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory