Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 94 curated entries in PaperBLAST's database that match '1.1.1.35'.

These curated entries have 62 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_2695: NAD-dependent epimerase/dehydratase (RefSeq)
is similar to:
PaperBLAST

COLC_YERPU / G4WJD3: GDP-L-colitose synthase; EC 1.1.1.356 from Yersinia pseudotuberculosis

37% id,
100% cov

DvMF_3100: 3-oxoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:
PaperBLAST

HCD2_HUMAN / Q99714: 3-hydroxyacyl-CoA dehydrogenase type-2; 17-beta-estradiol 17-dehydrogenase; 2-methyl-3-hydroxybutyryl-CoA dehydrogenase; MHBD; 3-alpha-(17-beta)-hydroxysteroid dehydrogenase (NAD(+)); 3-hydroxy-2-methylbutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase type II; 3alpha(or 20beta)-hydroxysteroid dehydrogenase; 7-alpha-hydroxysteroid dehydrogenase; Endoplasmic reticulum-associated amyloid beta-peptide-binding protein; Mitochondrial ribonuclease P protein 2; Mitochondrial RNase P protein 2; Short chain dehydrogenase/reductase family 5C member 1; Short-chain type dehydrogenase/reductase XH98G2; Type II HADH; EC 1.1.1.35; EC 1.1.1.62; EC 1.1.1.239; EC 1.1.1.178; EC 1.1.1.53; EC 1.1.1.159 from Homo sapiens
HSD17B10 / Q99714: 3-hydroxy-2-methylbutyryl-CoA dehydrogenase subunit (EC 1.1.1.35; EC 1.1.1.178; EC 1.1.1.239) from Homo sapiens

33% id,
94% cov

HCD2_DROME / O18404: 3-hydroxyacyl-CoA dehydrogenase type-2; 17-beta-hydroxysteroid dehydrogenase 10; 17-beta-HSD 10; 3-hydroxyacyl-CoA dehydrogenase type II; Hydroxysteroid dehydrogenase; Mitochondrial ribonuclease P protein 2; Mitochondrial RNase P protein 2; Scully protein; Type II HADH; EC 1.1.1.35; EC 1.1.1.51; EC 1.1.1.62; EC 1.1.1.-; EC 1.1.1.53 from Drosophila melanogaster

31% id,
97% cov

Q9I1X3: 3alpha-hydroxysteroid 3-dehydrogenase (EC 1.1.1.357); 3alpha-hydroxysteroid 3-dehydrogenase (Si-specific) (EC 1.1.1.50) from Pseudomonas aeruginosa

36% id,
84% cov

More...

DvMF_2858: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

HCD2_DROME / O18404: 3-hydroxyacyl-CoA dehydrogenase type-2; 17-beta-hydroxysteroid dehydrogenase 10; 17-beta-HSD 10; 3-hydroxyacyl-CoA dehydrogenase type II; Hydroxysteroid dehydrogenase; Mitochondrial ribonuclease P protein 2; Mitochondrial RNase P protein 2; Scully protein; Type II HADH; EC 1.1.1.35; EC 1.1.1.51; EC 1.1.1.62; EC 1.1.1.-; EC 1.1.1.53 from Drosophila melanogaster

30% id,
96% cov

Q9I1X3: 3alpha-hydroxysteroid 3-dehydrogenase (EC 1.1.1.357); 3alpha-hydroxysteroid 3-dehydrogenase (Si-specific) (EC 1.1.1.50) from Pseudomonas aeruginosa

33% id,
83% cov

HCD2_MOUSE / O08756: 3-hydroxyacyl-CoA dehydrogenase type-2; 17-beta-estradiol 17-dehydrogenase; 2-methyl-3-hydroxybutyryl-CoA dehydrogenase; MHBD; 3-alpha-(17-beta)-hydroxysteroid dehydrogenase (NAD(+)); 3-hydroxy-2-methylbutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase type II; 3alpha(or 20beta)-hydroxysteroid dehydrogenase; 7-alpha-hydroxysteroid dehydrogenase; Endoplasmic reticulum-associated amyloid beta-peptide-binding protein; Mitochondrial ribonuclease P protein 2; Mitochondrial RNase P protein 2; Short chain dehydrogenase/reductase family 5C member 1; Short-chain type dehydrogenase/reductase XH98G2; Type II HADH; EC 1.1.1.35; EC 1.1.1.62; EC 1.1.1.239; EC 1.1.1.178; EC 1.1.1.53; EC 1.1.1.159 from Mus musculus

29% id,
94% cov

DvMF_1995: Malate/L-lactate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ALLD_ECOLI / P77555: Ureidoglycolate dehydrogenase (NAD(+)); EC 1.1.1.350 from Escherichia coli
YlbC / b0517: ureidoglycolate dehydrogenase (EC 1.1.1.350) from Escherichia coli
allD / P77555: ureidoglycolate dehydrogenase (EC 1.1.1.350) from Escherichia coli
P77555: ureidoglycolate dehydrogenase (NAD+) (EC 1.1.1.350) from Escherichia coli

30% id,
95% cov

DvMF_2444: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

HCD2_HUMAN / Q99714: 3-hydroxyacyl-CoA dehydrogenase type-2; 17-beta-estradiol 17-dehydrogenase; 2-methyl-3-hydroxybutyryl-CoA dehydrogenase; MHBD; 3-alpha-(17-beta)-hydroxysteroid dehydrogenase (NAD(+)); 3-hydroxy-2-methylbutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase type II; 3alpha(or 20beta)-hydroxysteroid dehydrogenase; 7-alpha-hydroxysteroid dehydrogenase; Endoplasmic reticulum-associated amyloid beta-peptide-binding protein; Mitochondrial ribonuclease P protein 2; Mitochondrial RNase P protein 2; Short chain dehydrogenase/reductase family 5C member 1; Short-chain type dehydrogenase/reductase XH98G2; Type II HADH; EC 1.1.1.35; EC 1.1.1.62; EC 1.1.1.239; EC 1.1.1.178; EC 1.1.1.53; EC 1.1.1.159 from Homo sapiens
HSD17B10 / Q99714: 3-hydroxy-2-methylbutyryl-CoA dehydrogenase subunit (EC 1.1.1.35; EC 1.1.1.178; EC 1.1.1.239) from Homo sapiens

27% id,
98% cov

HCD2_MOUSE / O08756: 3-hydroxyacyl-CoA dehydrogenase type-2; 17-beta-estradiol 17-dehydrogenase; 2-methyl-3-hydroxybutyryl-CoA dehydrogenase; MHBD; 3-alpha-(17-beta)-hydroxysteroid dehydrogenase (NAD(+)); 3-hydroxy-2-methylbutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase type II; 3alpha(or 20beta)-hydroxysteroid dehydrogenase; 7-alpha-hydroxysteroid dehydrogenase; Endoplasmic reticulum-associated amyloid beta-peptide-binding protein; Mitochondrial ribonuclease P protein 2; Mitochondrial RNase P protein 2; Short chain dehydrogenase/reductase family 5C member 1; Short-chain type dehydrogenase/reductase XH98G2; Type II HADH; EC 1.1.1.35; EC 1.1.1.62; EC 1.1.1.239; EC 1.1.1.178; EC 1.1.1.53; EC 1.1.1.159 from Mus musculus

25% id,
98% cov

HCD2_DROME / O18404: 3-hydroxyacyl-CoA dehydrogenase type-2; 17-beta-hydroxysteroid dehydrogenase 10; 17-beta-HSD 10; 3-hydroxyacyl-CoA dehydrogenase type II; Hydroxysteroid dehydrogenase; Mitochondrial ribonuclease P protein 2; Mitochondrial RNase P protein 2; Scully protein; Type II HADH; EC 1.1.1.35; EC 1.1.1.51; EC 1.1.1.62; EC 1.1.1.-; EC 1.1.1.53 from Drosophila melanogaster

27% id,
75% cov

More...

DvMF_2079: NmrA family protein (RefSeq)
is similar to:
PaperBLAST

Q9SZB3: farnesol dehydrogenase (NAD+) (EC 1.1.1.354) from Arabidopsis thaliana

28% id,
84% cov

DvMF_0398: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

HCD2_DROME / O18404: 3-hydroxyacyl-CoA dehydrogenase type-2; 17-beta-hydroxysteroid dehydrogenase 10; 17-beta-HSD 10; 3-hydroxyacyl-CoA dehydrogenase type II; Hydroxysteroid dehydrogenase; Mitochondrial ribonuclease P protein 2; Mitochondrial RNase P protein 2; Scully protein; Type II HADH; EC 1.1.1.35; EC 1.1.1.51; EC 1.1.1.62; EC 1.1.1.-; EC 1.1.1.53 from Drosophila melanogaster

29% id,
75% cov

Q84X95: 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) from Brassica napus

29% id,
62% cov

Q84X96: 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) from Brassica napus

29% id,
62% cov

DvMF_2922: NAD-dependent epimerase/dehydratase (RefSeq)
is similar to:
PaperBLAST

KANK_STRKN / Q2MFU6: 2'-dehydrokanamycin reductase; Kanamycin biosynthesis protein K; EC 1.1.1.355 from Streptomyces kanamyceticus
kanK / Q2MFU6: 2'-oxokanamycin reductase (EC 1.1.1.355) from Streptomyces kanamyceticus
Q2MFU6: 2'-dehydrokanamycin reductase (EC 1.1.1.355) from Streptomyces kanamyceticus

27% id,
75% cov

DvMF_0529: aldo/keto reductase (RefSeq)
is similar to:
PaperBLAST

VRDA_ASPPA / B9WYE6: Versiconal hemiacetal acetate reductase; VHA reductase; EC 1.1.1.353 from Aspergillus parasiticus
B9WYE6: versiconal hemiacetal acetate reductase (EC 1.1.1.353) from Aspergillus parasiticus

27% id,
69% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory