Curated BLAST
Searching in Desulfovibrio vulgaris Miyazaki F (Miya)
Found 72 curated entries in PaperBLAST's database that match '1.1.1.42' as complete word(s).
These curated entries have 51 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query
DvMF_1739: isocitrate/isopropylmalate dehydrogenase (RefSeq) is similar to: | PaperBLAST |
IDH_PSEAB / Q02NB5: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Pseudomonas aeruginosa | 56% id, 92% cov |
IDH_BACSU / P39126: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Bacillus subtilis icd / GB|CAB14873.1: isocitrate dehydrogenase; EC 1.1.1.42 from Bacillus subtilis | 54% id, 95% cov |
Q1GZD1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Methylobacillus flagellatus | 55% id, 93% cov |
Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum | 54% id, 94% cov |
D0Z8Y6: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Edwardsiella tarda | 55% id, 92% cov |
IDH_COXBU / Q9ZH99: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Coxiella burnetii | 55% id, 92% cov |
Q1XIQ8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Colwellia psychrerythraea | 53% id, 92% cov |
IDH_ECOLI / P08200: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Escherichia coli IcdE / b1136: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli icd / P08200: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli | 53% id, 92% cov |
IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; IDH; ICDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii | 52% id, 90% cov |
icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui | 51% id, 90% cov |
icd / B2ZP83: isocitrate dehydrogenase subunit (EC 1.1.1.42) from Helicobacter pylori | 49% id, 92% cov |
Q9YE81: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Aeropyrum pernix | 48% id, 88% cov |
P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus | 46% id, 89% cov |
A8YGS2: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Microcystis aeruginosa | 50% id, 51% cov |
icd / RF|YP_144801.1: isocitrate dehydrogenase (NADP(+)); EC 1.1.1.42 from Thermus thermophilus P33197: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermus thermophilus | 34% id, 66% cov |
A8YGS2: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Microcystis aeruginosa | 51% id, 34% cov |
More... |
DvMF_1794: 3-isopropylmalate dehydrogenase (RefSeq) is similar to: | PaperBLAST |
IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; IDH; ICDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii | 30% id, 92% cov |
icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui | 30% id, 91% cov |
P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus | 29% id, 90% cov |
IDH_PSEAB / Q02NB5: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Pseudomonas aeruginosa | 27% id, 93% cov |
icd / RF|YP_144801.1: isocitrate dehydrogenase (NADP(+)); EC 1.1.1.42 from Thermus thermophilus P33197: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermus thermophilus | 39% id, 64% cov |
Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum | 27% id, 89% cov |
Q1GZD1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Methylobacillus flagellatus | 26% id, 93% cov |
Q9YE81: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Aeropyrum pernix | 28% id, 84% cov |
icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui | 35% id, 39% cov |
IDH_COXBU / Q9ZH99: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Coxiella burnetii | 34% id, 36% cov |
A8YGS2: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Microcystis aeruginosa | 28% id, 44% cov |
IDH_ECOLI / P08200: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Escherichia coli IcdE / b1136: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli icd / P08200: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli | 34% id, 34% cov |
D0Z8Y6: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Edwardsiella tarda | 33% id, 34% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins.
These remaining reading frames may be pseudogenes, omissions in the genome annotation,
or N-terminal extensions of annotated proteins.
2126000-2127247 (frame -3) on 254340 is similar to: | PaperBLAST |
IDH_PSEAB / Q02NB5: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Pseudomonas aeruginosa Also see hits to annotated proteins above | 56% id, 95% cov |
D0Z8Y6: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Edwardsiella tarda Also see hits to annotated proteins above | 52% id, 98% cov |
Q9YE81: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Aeropyrum pernix Also see hits to annotated proteins above | 46% id, 94% cov |
A8YGS2: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Microcystis aeruginosa Also see hits to annotated proteins above | 47% id, 55% cov |
More... |
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory