Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 67 curated entries in PaperBLAST's database that match '1.1.1.42' as complete word(s).

These curated entries have 46 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_1739: isocitrate/isopropylmalate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

IDH_PSEAB / Q02NB5: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Pseudomonas aeruginosa

56% id,
92% cov

IDH_BACSU / P39126: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Bacillus subtilis
icd / GB|CAB14873.1: isocitrate dehydrogenase; EC 1.1.1.42 from Bacillus subtilis

54% id,
95% cov

Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum

54% id,
94% cov

More...

DvMF_1794: 3-isopropylmalate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

O29610: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Archaeoglobus fulgidus

32% id,
91% cov

IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; IDH; ICDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii

30% id,
92% cov

icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui

30% id,
91% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2126000-2127247 (frame -3) on 254340
is similar to:
PaperBLAST

IDH_PSEAB / Q02NB5: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Pseudomonas aeruginosa
Also see hits to annotated proteins above

56% id,
95% cov

Q9YE81: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Aeropyrum pernix
Also see hits to annotated proteins above

46% id,
94% cov

A8YGS2: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Microcystis aeruginosa
Also see hits to annotated proteins above

47% id,
55% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory