Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 11 curated entries in PaperBLAST's database that match '1.1.1.67' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_3100: 3-oxoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:
PaperBLAST

lxr1 / Q8NK50: D-mannitol 2-dehydrogenase (EC 1.1.1.67) from Hypocrea jecorina

29% id,
91% cov

DvMF_2816: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

lxr1 / Q8NK50: D-mannitol 2-dehydrogenase (EC 1.1.1.67) from Hypocrea jecorina

26% id,
94% cov

DvMF_1170: Alcohol dehydrogenase zinc-binding domain protein (RefSeq)
is similar to:
PaperBLAST

Q6ECH5: mannitol 2-dehydrogenase (EC 1.1.1.67) from Lactobacillus reuteri

26% id,
57% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3912753-3913532 (frame -2) on 254340
is similar to:
PaperBLAST

lxr1 / Q8NK50: D-mannitol 2-dehydrogenase (EC 1.1.1.67) from Hypocrea jecorina
Also see hits to annotated proteins above

29% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory