Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 5 curated entries in PaperBLAST's database that match '1.2.1.20' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_2146: delta-1-pyrroline-5-carboxylate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

PfGW456L13_495: Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) from Pseudomonas fluorescens

32% id,
95% cov

gabD / P25526: succinate-semialdehyde dehydrogenase (NADP+) GabD (EC 1.2.1.79; EC 1.2.1.20) from Escherichia coli

32% id,
97% cov

davD / Q9I6M5: glutarate semialdehyde dehydrogenase (EC 1.2.1.20) from Pseudomonas aeruginosa

32% id,
95% cov

More...

DvMF_2633: Aldehyde Dehydrogenase (RefSeq)
is similar to:
PaperBLAST

davD / Q9I6M5: glutarate semialdehyde dehydrogenase (EC 1.2.1.20) from Pseudomonas aeruginosa

24% id,
89% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory