Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 21 curated entries in PaperBLAST's database that match '1.2.1.27' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_2146: delta-1-pyrroline-5-carboxylate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

IOLA_BACSU / P42412: Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis
mmsA / P42412: (methyl)malonate-semialdehyde dehydrogenase monomer (EC 1.2.1.27; EC 1.2.1.18) from Bacillus subtilis
P42412: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Bacillus subtilis

32% id,
98% cov

Q97YT9: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Saccharolobus solfataricus

31% id,
99% cov

G5CZI2: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Oceanimonas doudoroffii

32% id,
96% cov

More...

DvMF_1780: Aldehyde Dehydrogenase (RefSeq)
is similar to:
PaperBLAST

G5CZI2: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Oceanimonas doudoroffii

26% id,
96% cov

CCNA_01360: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Caulobacter crescentus

27% id,
93% cov

BAUC_PSEAE / Q9I702: Malonate-semialdehyde dehydrogenase; 3-oxopropanoate dehydrogenase; EC 1.2.1.27 from Pseudomonas aeruginosa

25% id,
95% cov

More...

DvMF_2633: Aldehyde Dehydrogenase (RefSeq)
is similar to:
PaperBLAST

MMSA_PSEAE / P28810: Methylmalonate-semialdehyde dehydrogenase [acylating]; MMSDH; EC 1.2.1.27 from Pseudomonas aeruginosa
mmsA / P28810: methylmalonate-semialdehyde dehydrogenase subunit (EC 1.2.1.27) from Pseudomonas aeruginosa

25% id,
79% cov

AO353_05990: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas fluorescens

26% id,
77% cov

Pf1N1B4_1229: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) from Pseudomonas fluorescens

25% id,
78% cov

More...

DvMF_2322: bifunctional acetaldehyde-CoA/alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

CCNA_01360: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) from Caulobacter crescentus

21% id,
88% cov

G5CZI2: methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) from Oceanimonas doudoroffii

24% id,
61% cov

BAUC_PSEAE / Q9I702: Malonate-semialdehyde dehydrogenase; 3-oxopropanoate dehydrogenase; EC 1.2.1.27 from Pseudomonas aeruginosa

23% id,
61% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory