Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 169 curated entries in PaperBLAST's database that match '1.2.1.3'.

These curated entries have 126 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_2322: bifunctional acetaldehyde-CoA/alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum

56% id,
99% cov

A9KN57: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Lachnoclostridium phytofermentans

35% id,
84% cov

YdbG / b1385: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli
feaB / P80668: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli
P80668: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Escherichia coli

22% id,
59% cov

DvMF_1717: N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq)
is similar to:
PaperBLAST

ARGC_GEOSE / Q07906: N-acetyl-gamma-glutamyl-phosphate reductase; AGPR; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase; EC 1.2.1.38 from Geobacillus stearothermophilus

44% id,
100% cov

P9WPZ9: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) from Mycobacterium tuberculosis

39% id,
97% cov

ARGC_ARATH / Q93Z70: Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic; AGPR; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase; EC 1.2.1.38 from Arabidopsis thaliana

43% id,
86% cov

More...

DvMF_2146: delta-1-pyrroline-5-carboxylate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

A9YD19: retinal dehydrogenase (EC 1.2.1.36) from Danio rerio

33% id,
98% cov

AL8A1_MOUSE / Q8BH00: 2-aminomuconic semialdehyde dehydrogenase; Aldehyde dehydrogenase family 8 member A1; Retinal dehydrogenase 4; EC 1.2.1.32 from Mus musculus
Q8BH00: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Mus musculus

33% id,
97% cov

Q83XU8: aminomuconate-semialdehyde dehydrogenase (EC 1.2.1.32) from Burkholderia cepacia

34% id,
92% cov

More...

DvMF_2633: Aldehyde Dehydrogenase (RefSeq)
is similar to:
PaperBLAST

AL3H1_ARATH / Q70DU8: Aldehyde dehydrogenase family 3 member H1; AtALDH4; Ath-ALDH4; EC 1.2.1.3 from Arabidopsis thaliana
Q70DU8: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Arabidopsis thaliana

34% id,
90% cov

Q3UNF5: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Mus musculus

32% id,
95% cov

AL3A2_RAT / P30839: Aldehyde dehydrogenase family 3 member A2; Aldehyde dehydrogenase 4; Fatty aldehyde dehydrogenase; Microsomal aldehyde dehydrogenase; msALDH; EC 1.2.1.3; EC 1.2.1.94 from Rattus norvegicus

31% id,
95% cov

More...

DvMF_1780: Aldehyde Dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Q5P171: phenylacetaldehyde dehydrogenase (EC 1.2.1.39) from Aromatoleum aromaticum

28% id,
94% cov

AL1A1_RABIT / Q8MI17: Aldehyde dehydrogenase 1A1; 3-deoxyglucosone dehydrogenase; ALDH-E1; ALHDII; Aldehyde dehydrogenase family 1 member A1; Aldehyde dehydrogenase, cytosolic; Retinal dehydrogenase 1; RALDH 1; RalDH1; EC 1.2.1.19; EC 1.2.1.28; EC 1.2.1.3; EC 1.2.1.36 from Oryctolagus cuniculus

29% id,
90% cov

AL1A1_MACFA / Q8HYE4: Aldehyde dehydrogenase 1A1; 3-deoxyglucosone dehydrogenase; ALDH-E1; ALHDII; Aldehyde dehydrogenase family 1 member A1; Aldehyde dehydrogenase, cytosolic; Retinal dehydrogenase 1; RALDH 1; RalDH1; EC 1.2.1.19; EC 1.2.1.28; EC 1.2.1.3; EC 1.2.1.36 from Macaca fascicularis

29% id,
90% cov

More...

DvMF_2382: aspartate-semialdehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ARGC_ECOLI / P11446: N-acetyl-gamma-glutamyl-phosphate reductase; AGPR; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase; EC 1.2.1.38 from Escherichia coli
ArgC / b3958: N-acetylglutamylphosphate reductase (EC 1.2.1.38) from Escherichia coli
argC / P11446: N-acetylglutamylphosphate reductase (EC 1.2.1.38) from Escherichia coli
P11446: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) from Escherichia coli

25% id,
78% cov

DvMF_1170: Alcohol dehydrogenase zinc-binding domain protein (RefSeq)
is similar to:
PaperBLAST

ADH_CUPNH / Q0KDL6: Alcohol dehydrogenase; EC 1.1.1.1; EC 1.1.1.4; EC 1.2.1.3 from Cupriavidus necator

33% id,
44% cov

DvMF_0321: iron-containing alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum

29% id,
47% cov

DvMF_0990: iron-containing alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum

27% id,
47% cov

DvMF_2243: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

B2HN69: aryl-aldehyde dehydrogenase (NADP+) (EC 1.2.1.30) from Mycobacterium marinum

27% id,
46% cov

CAR_NOCIO / Q6RKB1: Carboxylic acid reductase; CAR; ATP/NADPH-dependent carboxylic acid reductase; Aryl aldehyde oxidoreductase; EC 1.2.1.-; EC 1.2.1.30 from Nocardia iowensis
car / Q6RKB1: carboxylic acid reductase (EC 1.2.1.30) from Nocardia iowensis
Q6RKB1: aryl-aldehyde dehydrogenase (NADP+) (EC 1.2.1.30) from Nocardia iowensis

24% id,
47% cov

DvMF_0330: iron-containing alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum

25% id,
45% cov

DvMF_1315: iron-containing alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum

28% id,
34% cov

DvMF_0306: acetylglutamate kinase (RefSeq)
is similar to:
PaperBLAST

ARG56_YEAST / Q01217: Protein ARG5,6, mitochondrial; EC 1.2.1.38; EC 2.7.2.8 from Saccharomyces cerevisiae

27% id,
31% cov

ARG56_SCHPO / P31318: Protein arg11, mitochondrial; EC 1.2.1.38; EC 2.7.2.8 from Schizosaccharomyces pombe
arg11 / GI|1204210: N-acetyl-gamma-glutamyl-phosphate reductase/acetylglutamate kinase; EC 1.2.1.38; EC 2.7.2.8 from Schizosaccharomyces pombe

28% id,
30% cov

DvMF_2783: acetate/CoA ligase (RefSeq)
is similar to:
PaperBLAST

LYS2_YEAST / P07702: L-2-aminoadipate reductase; Alpha-aminoadipate reductase; Alpha-AR; L-aminoadipate-semialdehyde dehydrogenase; EC 1.2.1.31; EC 1.2.1.95 from Saccharomyces cerevisiae

22% id,
19% cov

Q8NJ21: L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31) from Kluyveromyces lactis

26% id,
6% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. Except for 4 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

208994-209797 (frame +2) on 254340
is similar to:
PaperBLAST

amnC / O68391: 2-aminomucoate semialdehyde dehydrogenase subunit (EC 1.2.1.32) from Pseudomonas oleovorans
Also see hits to annotated proteins above

47% id,
33% cov

2816996-2818786 (frame -3) on 254340
is similar to:
PaperBLAST

B2HN69: aryl-aldehyde dehydrogenase (NADP+) (EC 1.2.1.30) from Mycobacterium marinum
Also see hits to annotated proteins above

27% id,
48% cov

352497-353687 (frame -2) on 254340
is similar to:
PaperBLAST

ARG56_SCHPO / P31318: Protein arg11, mitochondrial; EC 1.2.1.38; EC 2.7.2.8 from Schizosaccharomyces pombe
arg11 / GI|1204210: N-acetyl-gamma-glutamyl-phosphate reductase/acetylglutamate kinase; EC 1.2.1.38; EC 2.7.2.8 from Schizosaccharomyces pombe
Also see hits to annotated proteins above

25% id,
38% cov

2268104-2269423 (frame -3) on 254340
is similar to:
PaperBLAST

amnC / O68391: 2-aminomucoate semialdehyde dehydrogenase subunit (EC 1.2.1.32) from Pseudomonas oleovorans
Also see hits to annotated proteins above

31% id,
31% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory