Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 13 curated entries in PaperBLAST's database that match '1.2.7.5' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_2672: 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq)
is similar to:
PaperBLAST

B9MQI1: aldehyde ferredoxin oxidoreductase (subunit 1/2) (EC 1.2.7.5); glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) (subunit 1/2) (EC 1.2.7.6) from Caldicellulosiruptor bescii

43% id,
99% cov

DvMF_2671: Aldehyde ferredoxin oxidoreductase (RefSeq)
is similar to:
PaperBLAST

B9MQI2: aldehyde ferredoxin oxidoreductase (subunit 2/2) (EC 1.2.7.5); glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) (subunit 2/2) (EC 1.2.7.6) from Caldicellulosiruptor bescii

41% id,
97% cov

aor / Q5P143: tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) from Aromatoleum aromaticum

28% id,
93% cov

B0K0E5: aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) from Thermoanaerobacter sp.

27% id,
93% cov

More...

DvMF_1956: Aldehyde ferredoxin oxidoreductase (RefSeq)
is similar to:
PaperBLAST

B0K0E5: aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) from Thermoanaerobacter sp.

36% id,
92% cov

AOR_PYRFU / Q51739: Tungsten-containing aldehyde ferredoxin oxidoreductase; EC 1.2.7.5 from Pyrococcus furiosus
aor / RF|NP_578075.1: aldehyde ferredoxin oxidoreductase; EC 1.2.7.5 from Pyrococcus furiosus
aor / Q51739: tungsten-containing aldehyde ferredoxin oxidoreductase monomer (EC 1.2.7.5) from Pyrococcus furiosus
Q51739: aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) from Pyrococcus furiosus

36% id,
92% cov

aor / Q5P143: tungsten-containing aldehyde ferredoxin oxidoreductase (EC 1.2.7.5) from Aromatoleum aromaticum

34% id,
92% cov

More...

DvMF_2469: 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq)
is similar to:
PaperBLAST

B9MQI1: aldehyde ferredoxin oxidoreductase (subunit 1/2) (EC 1.2.7.5); glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) (subunit 1/2) (EC 1.2.7.6) from Caldicellulosiruptor bescii

31% id,
93% cov

DvMF_2597: 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq)
is similar to:
PaperBLAST

B9MQI1: aldehyde ferredoxin oxidoreductase (subunit 1/2) (EC 1.2.7.5); glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) (subunit 1/2) (EC 1.2.7.6) from Caldicellulosiruptor bescii

26% id,
90% cov

DvMF_0319: 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq)
is similar to:
PaperBLAST

B9MQI1: aldehyde ferredoxin oxidoreductase (subunit 1/2) (EC 1.2.7.5); glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) (subunit 1/2) (EC 1.2.7.6) from Caldicellulosiruptor bescii

26% id,
89% cov

DvMF_1611: dimethylsulfoxide reductase, chain B (RefSeq)
is similar to:
PaperBLAST

B9MQI1: aldehyde ferredoxin oxidoreductase (subunit 1/2) (EC 1.2.7.5); glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) (subunit 1/2) (EC 1.2.7.6) from Caldicellulosiruptor bescii

23% id,
90% cov

DvMF_1693: 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq)
is similar to:
PaperBLAST

B9MQI1: aldehyde ferredoxin oxidoreductase (subunit 1/2) (EC 1.2.7.5); glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) (subunit 1/2) (EC 1.2.7.6) from Caldicellulosiruptor bescii

33% id,
32% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory