Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 41 curated entries in PaperBLAST's database that match '1.3.3.6' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_0766: 2-nitropropane dioxygenase NPD (RefSeq)
is similar to:
PaperBLAST

fabX / O25465: decanoate oxidase (EC 1.3.3.6; EC 5.3.3.14) from Helicobacter pylori

42% id,
98% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory