Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 25 curated entries in PaperBLAST's database that match '1.4.4.2' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_0225: glycine cleavage system protein H (RefSeq) is similar to:	PaperBLAST
P25855: glycine cleavage system (subunit 3/5) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana	45% id, 76% cov
P23434: glycine cleavage system (subunit 3/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens	48% id, 67% cov

DvMF_0223: glycine dehydrogenase subunit 2 (RefSeq) is similar to:	PaperBLAST
PS417_22360: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas simiae	40% id, 44% cov
Pf6N2E2_5558: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens	39% id, 45% cov
AO353_03500: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens	39% id, 45% cov
PfGW456L13_1868: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens	39% id, 44% cov
GCSP2_ARATH / O80988: Glycine dehydrogenase (decarboxylating) 2, mitochondrial; Glycine cleavage system P protein 2; Glycine decarboxylase 2; Glycine decarboxylase P-protein 2; AtGLDP2; Glycine dehydrogenase (aminomethyl-transferring) 2; EC 1.4.4.2 from Arabidopsis thaliana	39% id, 45% cov
GCSP1_ARATH / Q94B78: Glycine dehydrogenase (decarboxylating) 1, mitochondrial; Glycine cleavage system P protein 1; Glycine decarboxylase 1; Glycine decarboxylase P-protein 1; AtGLDP1; Glycine dehydrogenase (aminomethyl-transferring) 1; EC 1.4.4.2 from Arabidopsis thaliana	39% id, 43% cov
GCSPA_FLAPR / P49361: Glycine dehydrogenase (decarboxylating) A, mitochondrial; Glycine cleavage system P protein A; Glycine decarboxylase A; Glycine dehydrogenase (aminomethyl-transferring) A; EC 1.4.4.2 from Flaveria pringlei	37% id, 45% cov
BWI76_RS23870: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Klebsiella michiganensis	38% id, 43% cov
GCSP_PEA / P26969: Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Pisum sativum	38% id, 42% cov
A9PL02: glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Populus tremuloides	40% id, 40% cov
GCSP_CHICK / P15505: Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Gallus gallus GLDC / P15505: glycine decarboxylase subunit (EC 1.4.4.2) from Gallus gallus P15505: glycine cleavage system (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Gallus gallus	38% id, 42% cov
GCSP_ECOLI / P33195: Glycine dehydrogenase (decarboxylating); Glycine cleavage system P-protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Escherichia coli GcvP / b2903: glycine decarboxylase (EC 1.4.4.2) from Escherichia coli gcvP: glycine dehydrogenase [decarboxylating]; EC 1.4.4.2 from Escherichia coli gcvP / P33195: glycine decarboxylase (EC 1.4.4.2) from Escherichia coli	39% id, 41% cov
GCSP_HUMAN / P23378: Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Homo sapiens GLDC / P23378: Glycine dehydrogenase [decarboxylating], mitochondrial (EC 1.4.4.2) from Homo sapiens P23378: glycine cleavage system (subunit 4/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens	38% id, 42% cov
GCSP_YEAST / P49095: Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine decarboxylase complex subunit P; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Saccharomyces cerevisiae	40% id, 39% cov
GCSP_SCHPO / Q09785: Putative glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Schizosaccharomyces pombe	36% id, 41% cov
D4A5Q9: glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Rattus norvegicus	37% id, 18% cov
D4A5Q9: glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Rattus norvegicus	36% id, 11% cov
More...

DvMF_0224: glycine dehydrogenase subunit 1 (RefSeq) is similar to:	PaperBLAST
PfGW456L13_1868: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens	34% id, 40% cov
AO353_03500: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens	33% id, 40% cov
PS417_22360: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas simiae	34% id, 38% cov
GCSP_ECOLI / P33195: Glycine dehydrogenase (decarboxylating); Glycine cleavage system P-protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Escherichia coli GcvP / b2903: glycine decarboxylase (EC 1.4.4.2) from Escherichia coli gcvP: glycine dehydrogenase [decarboxylating]; EC 1.4.4.2 from Escherichia coli gcvP / P33195: glycine decarboxylase (EC 1.4.4.2) from Escherichia coli	34% id, 37% cov
Pf6N2E2_5558: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens	34% id, 37% cov
GCSP_CHICK / P15505: Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Gallus gallus GLDC / P15505: glycine decarboxylase subunit (EC 1.4.4.2) from Gallus gallus P15505: glycine cleavage system (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Gallus gallus	38% id, 32% cov
GCSP_HUMAN / P23378: Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Homo sapiens GLDC / P23378: Glycine dehydrogenase [decarboxylating], mitochondrial (EC 1.4.4.2) from Homo sapiens P23378: glycine cleavage system (subunit 4/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens	36% id, 33% cov
GCSP2_ARATH / O80988: Glycine dehydrogenase (decarboxylating) 2, mitochondrial; Glycine cleavage system P protein 2; Glycine decarboxylase 2; Glycine decarboxylase P-protein 2; AtGLDP2; Glycine dehydrogenase (aminomethyl-transferring) 2; EC 1.4.4.2 from Arabidopsis thaliana	33% id, 36% cov
GCSP_YEAST / P49095: Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine decarboxylase complex subunit P; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Saccharomyces cerevisiae	34% id, 34% cov
GCSP1_ARATH / Q94B78: Glycine dehydrogenase (decarboxylating) 1, mitochondrial; Glycine cleavage system P protein 1; Glycine decarboxylase 1; Glycine decarboxylase P-protein 1; AtGLDP1; Glycine dehydrogenase (aminomethyl-transferring) 1; EC 1.4.4.2 from Arabidopsis thaliana	32% id, 36% cov
GCSPA_FLAPR / P49361: Glycine dehydrogenase (decarboxylating) A, mitochondrial; Glycine cleavage system P protein A; Glycine decarboxylase A; Glycine dehydrogenase (aminomethyl-transferring) A; EC 1.4.4.2 from Flaveria pringlei	31% id, 36% cov
GCSP_SCHPO / Q09785: Putative glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Schizosaccharomyces pombe	32% id, 35% cov
BWI76_RS23870: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Klebsiella michiganensis	32% id, 35% cov
GCSP_PEA / P26969: Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Pisum sativum	32% id, 34% cov
A9PL02: glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Populus tremuloides	32% id, 32% cov
D4A5Q9: glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Rattus norvegicus	31% id, 24% cov
D4A5Q9: glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Rattus norvegicus	42% id, 17% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

252602-253000 (frame -3) on 254340 is similar to:	PaperBLAST
P25855: glycine cleavage system (subunit 3/5) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana Also see hits to annotated proteins above	42% id, 82% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory