Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 35 curated entries in PaperBLAST's database that match '1.5.1.1'.

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_1809: Methenyltetrahydrofolate cyclohydrolase (RefSeq)
is similar to:
PaperBLAST

Q46A53: methylenetetrahydrofolate dehydrogenase (NAD+) (EC 1.5.1.15); methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) from Methanosarcina barkeri

51% id,
93% cov

MTDC_DROME / Q04448: Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial; DNMDMC; EC 1.5.1.15; EC 3.5.4.9 from Drosophila melanogaster

50% id,
93% cov

MTD2L_RAT / D3ZUA0: Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase 2, mitochondrial; NADP-dependent methylenetetrahydrofolate dehydrogenase 2-like protein; MTHFD2-like; EC 1.5.1.15; EC 1.5.1.5; EC 3.5.4.9 from Rattus norvegicus

42% id,
87% cov

More...

DvMF_1995: Malate/L-lactate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

dpkA / Q88GX6: Δ1-piperideine-2-carboxylate reductase (EC 1.5.1.1) from Pseudomonas putida

42% id,
94% cov

DvMF_2146: delta-1-pyrroline-5-carboxylate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

33% id,
89% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

32% id,
69% cov

DvMF_1780: Aldehyde Dehydrogenase (RefSeq)
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

23% id,
80% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

25% id,
33% cov

DvMF_3034: 5,10-methylenetetrahydrofolate reductase (RefSeq)
is similar to:
PaperBLAST

Q9WU20: methylenetetrahydrofolate dehydrogenase (NAD+) (EC 1.5.1.15); methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Mus musculus

38% id,
44% cov

DvMF_2633: Aldehyde Dehydrogenase (RefSeq)
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

27% id,
55% cov

DvMF_0296: glutamyl-tRNA reductase (RefSeq)
is similar to:
PaperBLAST

CRYM / Q14894: ketimine reductase monomer (EC 1.5.1.1; EC 1.5.1.25) from Homo sapiens

29% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3828759-3829799 (frame +3) on 254340
is similar to:
PaperBLAST

Q9WU20: methylenetetrahydrofolate dehydrogenase (NAD+) (EC 1.5.1.15); methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Mus musculus
Also see hits to annotated proteins above

35% id,
50% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory