Curated BLAST for Genomes


Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 6 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_1995: Malate/L-lactate dehydrogenase (RefSeq)
is similar to:

dpkA / Q88GX6: Δ1-piperideine-2-carboxylate reductase (EC from Pseudomonas putida

42% id,
94% cov

Q4U331: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase [NAD(P)H] (EC; 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC from Pseudomonas syringae

40% id,
91% cov

DvMF_0296: glutamyl-tRNA reductase (RefSeq)
is similar to:

CRYM / Q14894: ketimine reductase monomer (EC; EC from Homo sapiens

29% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory