Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 5 curated entries in PaperBLAST's database that match '1.5.1.50' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 0 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3609853-3610692 (frame +1) on 254340
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum

29% id,
93% cov

3912753-3913532 (frame -2) on 254340
is similar to:
PaperBLAST

pruA / Q7CZX3: dihydropterin reductase monomer (EC 1.5.1.33; EC 1.5.1.50) from Agrobacterium fabrum

27% id,
92% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory