Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfovibrio vulgaris Miyazaki F (Miya)

Found 197 curated entries in PaperBLAST's database that match '2.4.2.1'.

These curated entries have 142 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Desulfovibrio vulgaris Miyazaki F, or try another query

DvMF_1963: ATP phosphoribosyltransferase (RefSeq)
is similar to:
PaperBLAST

DvMF_1963: ATP phosphoribosyltransferase (EC 2.4.2.17) from Desulfovibrio vulgaris

100% id,
100% cov

DVU0114: ATP phosphoribosyltransferase (EC 2.4.2.17) from Desulfovibrio vulgaris

88% id,
100% cov

HIS1_SALTY / P00499: ATP phosphoribosyltransferase; ATP-PRT; ATP-PRTase; EC 2.4.2.17 from Salmonella typhimurium

29% id,
100% cov

More...

DvMF_0821: purine nucleoside phosphorylase (RefSeq)
is similar to:
PaperBLAST

A0A3G5E8S8: purine-nucleoside phosphorylase (EC 2.4.2.1) from Aneurinibacillus migulanus

49% id,
93% cov

PUNA_GEOSE / P77834: Purine nucleoside phosphorylase 1; PNP 1; Inosine phosphorylase; Inosine-guanosine phosphorylase; Purine nucleoside phosphorylase I; PNP I; Pu-NPase I; EC 2.4.2.1 from Geobacillus stearothermophilus
P77834: purine-nucleoside phosphorylase (EC 2.4.2.1) from Geobacillus stearothermophilus

49% id,
92% cov

P55859: purine-nucleoside phosphorylase (EC 2.4.2.1) from Bos taurus

49% id,
90% cov

More...

DvMF_2307: amidophosphoribosyltransferase (RefSeq)
is similar to:
PaperBLAST

PUR1_BACSU / P00497: Amidophosphoribosyltransferase; ATase; Glutamine phosphoribosylpyrophosphate amidotransferase; GPATase; EC 2.4.2.14 from Bacillus subtilis

47% id,
95% cov

ASE1_ARATH / Q9SI61: Amidophosphoribosyltransferase 1, chloroplastic; AtATase1; PRPP1; Glutamine phosphoribosylpyrophosphate amidotransferase 1; AtGPRAT1; EC 2.4.2.14 from Arabidopsis thaliana
Q9SI61: amidophosphoribosyltransferase (EC 2.4.2.14) from Arabidopsis thaliana

51% id,
79% cov

PUR1_CHICK / P28173: Amidophosphoribosyltransferase; ATase; Glutamine phosphoribosylpyrophosphate amidotransferase; GPAT; EC 2.4.2.14 from Gallus gallus

41% id,
98% cov

More...

DvMF_0348: Triose-phosphate isomerase (RefSeq)
is similar to:
PaperBLAST

P00941: purine-nucleoside phosphorylase (EC 2.4.2.1) from Homo sapiens

42% id,
95% cov

DvMF_1469: orotate phosphoribosyltransferase (RefSeq)
is similar to:
PaperBLAST

P9WHK9: orotate phosphoribosyltransferase (EC 2.4.2.10) from Mycobacterium tuberculosis

42% id,
96% cov

PYRE_HALVD / D4GZW2: Orotate phosphoribosyltransferase; OPRT; OPRTase; EC 2.4.2.10 from Haloferax volcanii

35% id,
89% cov

PYRE_ECOLI / P0A7E3: Orotate phosphoribosyltransferase; OPRT; OPRTase; EC 2.4.2.10 from Escherichia coli
PyrE / b3642: orotate phosphoribosyltransferase (EC 2.4.2.10) from Escherichia coli
pyrE / P0A7E3: orotate phosphoribosyltransferase (EC 2.4.2.10) from Escherichia coli

30% id,
83% cov

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DvMF_0524: nicotinate-nucleotide pyrophosphorylase (RefSeq)
is similar to:
PaperBLAST

NADC_SALTY / P30012: Nicotinate-nucleotide pyrophosphorylase [carboxylating]; Quinolinate phosphoribosyltransferase [decarboxylating]; QAPRTase; EC 2.4.2.19 from Salmonella typhimurium

42% id,
92% cov

Q5XBL7: nicotinate-nucleotide diphosphorylase (carboxylating) (EC 2.4.2.19) from Streptococcus pyogenes

42% id,
92% cov

Q1J647: nicotinate-nucleotide diphosphorylase (carboxylating) (EC 2.4.2.19) from Streptococcus pyogenes

42% id,
90% cov

More...

DvMF_1744: anthranilate phosphoribosyltransferase (RefSeq)
is similar to:
PaperBLAST

TRPD_THET8 / Q5SH88: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Thermus thermophilus
TRPD_THETH / P83827: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Thermus thermophilus

41% id,
93% cov

TRPD_XANCP / Q8PD71: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Xanthomonas campestris

42% id,
88% cov

Q9YGB4: anthranilate phosphoribosyltransferase (EC 2.4.2.18) from Thermococcus kodakarensis

38% id,
95% cov

More...

DvMF_2317: protein of unknown function DUF152 (RefSeq)
is similar to:
PaperBLAST

PURNU_ECOLI / P33644: Purine nucleoside phosphorylase YfiH; Adenosine deaminase YfiH; Polyphenol oxidase YfiH; S-methyl-5'-thioadenosine phosphorylase YfiH; EC 2.4.2.1; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.28 from Escherichia coli
yfiH / P33644: purine nucleoside phosphorylase YfiH (EC 2.4.2.1; EC 2.4.2.28; EC 3.5.4.4; EC 1.10.3.2) from Escherichia coli

35% id,
96% cov

PURNU_BACTN / Q89ZI8: Purine nucleoside phosphorylase BT_4389; Adenosine deaminase BT_4389; S-methyl-5'-thioadenosine phosphorylase BT_4389; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Bacteroides thetaiotaomicron

29% id,
90% cov

LACC1_HUMAN / Q8IV20: Purine nucleoside phosphorylase LACC1; Adenosine deaminase LACC1; Fatty acid metabolism-immunity nexus; Guanosine phosphorylase LACC1; Laccase domain-containing protein 1; S-methyl-5'-thioadenosine phosphorylase LACC1; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Homo sapiens

29% id,
54% cov

DvMF_1706: glucosamine/fructose-6-phosphate aminotransferase, isomerizing (RefSeq)
is similar to:
PaperBLAST

ASE3_ARATH / Q9T0J5: Amidophosphoribosyltransferase 3, chloroplastic; AtATase3; PRPP3; Glutamine phosphoribosylpyrophosphate amidotransferase 3; AtGPRAT3; EC 2.4.2.14 from Arabidopsis thaliana
Q9T0J5: amidophosphoribosyltransferase (EC 2.4.2.14) from Arabidopsis thaliana

26% id,
69% cov

ASE2_ARATH / Q9STG9: Amidophosphoribosyltransferase 2, chloroplastic; AtATase2; AtPURF2; PRPP2; Glutamine phosphoribosylpyrophosphate amidotransferase 2; AtGPRAT2; Protein CHLOROPLAST IMPORT APPARATUS 1; Protein DIFFERENTIAL DEVELOPMENT OF VASCULAR ASSOCIATED CELLS; EC 2.4.2.14 from Arabidopsis thaliana
Q9STG9: amidophosphoribosyltransferase (EC 2.4.2.14) from Arabidopsis thaliana

25% id,
66% cov

PUR1_BACSU / P00497: Amidophosphoribosyltransferase; ATase; Glutamine phosphoribosylpyrophosphate amidotransferase; GPATase; EC 2.4.2.14 from Bacillus subtilis

31% id,
48% cov

More...

DvMF_1745: glutamine amidotransferase of anthranilate synthase (RefSeq)
is similar to:
PaperBLAST

TRPGD_SALTY / P00905: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Salmonella typhimurium

41% id,
34% cov

TRPGD_ECOLI / P00904: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Escherichia coli
TrpD / b1263: anthranilate synthase subunit TrpD (EC 2.4.2.18; EC 4.1.3.27) from Escherichia coli
trpD / P00904: anthranilate synthase subunit TrpD (EC 2.4.2.18) from Escherichia coli

41% id,
34% cov

DvMF_2316: glutamine amidotransferase class-I (RefSeq)
is similar to:
PaperBLAST

TRPGD_SALTY / P00905: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Salmonella typhimurium

35% id,
27% cov

TRPGD_ECOLI / P00904: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Escherichia coli
TrpD / b1263: anthranilate synthase subunit TrpD (EC 2.4.2.18; EC 4.1.3.27) from Escherichia coli
trpD / P00904: anthranilate synthase subunit TrpD (EC 2.4.2.18) from Escherichia coli

35% id,
27% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2082798-2084789 (frame +3) on 254340
is similar to:
PaperBLAST

ASE2_ARATH / Q9STG9: Amidophosphoribosyltransferase 2, chloroplastic; AtATase2; AtPURF2; PRPP2; Glutamine phosphoribosylpyrophosphate amidotransferase 2; AtGPRAT2; Protein CHLOROPLAST IMPORT APPARATUS 1; Protein DIFFERENTIAL DEVELOPMENT OF VASCULAR ASSOCIATED CELLS; EC 2.4.2.14 from Arabidopsis thaliana
Q9STG9: amidophosphoribosyltransferase (EC 2.4.2.14) from Arabidopsis thaliana
Also see hits to annotated proteins above

25% id,
76% cov

ASE1_ARATH / Q9SI61: Amidophosphoribosyltransferase 1, chloroplastic; AtATase1; PRPP1; Glutamine phosphoribosylpyrophosphate amidotransferase 1; AtGPRAT1; EC 2.4.2.14 from Arabidopsis thaliana
Q9SI61: amidophosphoribosyltransferase (EC 2.4.2.14) from Arabidopsis thaliana
Also see hits to annotated proteins above

26% id,
54% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory